Strain identifier

BacDive ID: 134482

Type strain: No

Species: Kocuria rhizophila

Strain history: CIP <- 2000, CECT <- NCIMB <- ATCC <- FDA ex derived from ATCC 10240 (CECT 245), Sarcina lutea

NCBI tax ID(s): 72000 (species)

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General

@ref: 32831

BacDive-ID: 134482

keywords: Bacteria, facultative anaerobe, mesophilic, Gram-positive, coccus-shaped

description: Kocuria rhizophila CIP 106519 is a facultative anaerobe, mesophilic, Gram-positive bacterium of the family Micrococcaceae.

NCBI tax id

  • NCBI tax id: 72000
  • Matching level: species

strain history

  • @ref: 32831
  • history: CIP <- 2000, CECT <- NCIMB <- ATCC <- FDA ex derived from ATCC 10240 (CECT 245), Sarcina lutea

doi: 10.13145/bacdive134482.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Kocuria
  • species: Kocuria rhizophila
  • full scientific name: Kocuria rhizophila Kovács et al. 1999

@ref: 32831

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Micrococcaceae

genus: Kocuria

species: Kocuria rhizophila

type strain: no

Morphology

cell morphology

  • @ref: 32831
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 32831

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
32831MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
32831CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperature
32831positivegrowth37
32831positivegrowth22-41
32831nogrowth10
32831nogrowth45

Physiology and metabolism

oxygen tolerance

  • @ref: 32831
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
32831606565hippurate+hydrolysis
3283117632nitrate-reduction
3283116301nitrite-reduction
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837117754glycerol-builds acid from
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose+builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose+builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837159640N-acetylglucosamine-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from

metabolite production

  • @ref: 32831
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 32831
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382cystine arylamidase-3.4.11.3
68382leucine arylamidase+3.4.11.1
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
32831oxidase-
32831beta-galactosidase-3.2.1.23
32831alcohol dehydrogenase-1.1.1.1
32831gelatinase-
32831amylase+
32831DNase-
32831caseinase-3.4.21.50
32831catalase+1.11.1.6
32831coagulase-
32831tween esterase-
32831gamma-glutamyltransferase+2.3.2.2
32831lecithinase-
32831lipase-
32831lysine decarboxylase-4.1.1.18
32831ornithine decarboxylase-4.1.1.17
32831phenylalanine ammonia-lyase-4.3.1.24
32831protease-
32831urease+3.5.1.5
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382beta-glucuronidase-3.2.1.31
68382valine arylamidase-

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
32831-+++++----++---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
32831----------+++---------+/--------+-+/-------+-+/--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
32831++-+---+--+--------------------+---+-------------+---+------++---------+++-++++++--++-+-+-+++-+-++-

Safety information

risk assessment

  • @ref: 32831
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 32831

culture collection no.: CIP 106519, ATCC 15957, CCRC 11055, CCTM La 2974, CECT 4093, NCIMB 12874

straininfo link

  • @ref: 92001
  • straininfo: 10528

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32831Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106519Collection of Institut Pasteur (CIP 106519)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
92001Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID10528.1