Strain identifier

BacDive ID: 13444

Type strain: Yes

Species: Saccharopolyspora erythraea

Strain Designation: M-5-12559

Strain history: KCC S-0748 <-- IFO 13426 <-- SAJ <-- ISP 5517 <-- Eli Lilly & Co.; M5-12559.

NCBI tax ID(s): 405948 (strain), 1836 (species)

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General

@ref: 9612

BacDive-ID: 13444

DSM-Number: 40517

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production

description: Saccharopolyspora erythraea M-5-12559 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

NCBI tax idMatching level
405948strain
1836species

strain history

@refhistory
9612<- E.B. Shirling, ISP <- C.E. Higgins, Lilly and Co., M-5-12559
67770KCC S-0748 <-- IFO 13426 <-- SAJ <-- ISP 5517 <-- Eli Lilly & Co.; M5-12559.

doi: 10.13145/bacdive13444.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Saccharopolyspora
  • species: Saccharopolyspora erythraea
  • full scientific name: Saccharopolyspora erythraea (Waksman 1923) Labeda 1987

  • synonyms

    @refsynonym
    20215Streptomyces erythraeus
    20215Actinomyces erythreus

@ref: 9612

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Saccharopolyspora

species: Saccharopolyspora erythraea

full scientific name: Saccharopolyspora erythraea (Waksman 1923) Labeda 1987 emend. Nouioui et al. 2018

strain designation: M-5-12559

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no91.135
69480100positive

multimedia

@refmultimedia contentintellectual property rightscaption
9612https://www.dsmz.de/microorganisms/photos/DSM_40517-1.jpg© Leibniz-Institut DSMZ
9612https://www.dsmz.de/microorganisms/photos/DSM_40517.jpg© Leibniz-Institut DSMZMedium 65 28°C

Culture and growth conditions

culture medium

  • @ref: 9612
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18604positiveoptimum30mesophilic
9612positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

@refcompound
9612erythromycin complex (A, B, C)
20216Erythromycin complex A
20216Erythromycin complex B
20216Erythromycin complex C

halophily

  • @ref: 18604
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 2.5 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4), MK-10(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1860417234glucose+
1860422599arabinose+
1860417992sucrose+
1860418222xylose+
1860417268myo-inositol+
1860429864mannitol+
1860428757fructose+
1860426546rhamnose+
1860416634raffinose+
1860462968cellulose+
6836817632nitrate-reduction
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol-fermentation
6836817634D-glucose-fermentation
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6777042355erythromycin Ayes
6777028196erythromycin Byes
6836817997dinitrogenno
6836816301nitriteno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

  • @ref: 68368
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382lipase (C 14)-
68382alpha-galactosidase-3.2.1.22
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- FucosidaseControlLeucine arylamidase
18604+-+-++++++-+-+-+--
9612+-+/-----------++----+/-

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARANO2N2
18604----+-+--++
9612------+---------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
9612soilPhilippinesPHLAsia
67770SoilPhilippinesPHLAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
186041German classification
96121Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Saccharopolyspora erythraea gene for 16S ribosomal RNA, partial sequence, strain: JCM 4748D44332121ena405948
20218Saccharopolyspora erythraea 16S rRNA (part.)X531981327ena405948

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Saccharopolyspora erythraea NRRL 2338GCA_000062885completencbi405948
66792Saccharopolyspora erythraea NRRL 2338405948.11completepatric405948
66792Saccharopolyspora erythraea NRRL 2338 (Prj:17885)405948.14wgspatric405948
66792Saccharopolyspora erythraea NRRL 2338 strain DSM 40517405948.30wgspatric405948
66792Saccharopolyspora erythraea DSM 405172630968997draftimg405948
66792Saccharopolyspora erythraea NRRL 2338640069329completeimg405948
66792Saccharopolyspora erythraea NRRL 2338647000310draftimg405948
67770Saccharopolyspora erythraea NRRL 2338GCA_000171635contigncbi405948
67770Saccharopolyspora erythraea NRRL 2338 DSM 40517GCA_002564065contigncbi405948

GC content

  • @ref: 67770
  • GC-content: 71.1
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno93.656no
flagellatedno97.602no
gram-positiveyes90.133no
anaerobicno98.224no
aerobicyes90.53no
halophileno58.76no
spore-formingyes92.184no
thermophileno96.408yes
glucose-utilyes87.853no
glucose-fermentno90.928yes

External links

@ref: 9612

culture collection no.: DSM 40517, AS 4.166, ATCC 11635, CBS 727.72, HUT 6087, IAM 0045, IFO 13426, ISP 5517, JCM 4026, JCM 4748, KCC S-0026, NBRC 13426, NCIB 8594, NRRL 2338, NRRL B-16947, RIA 1387, VKM Ac-1189, BCRC 13429, CECT 3200, CGMCC 4.1478, CGMCC 4.1660, HAMBI 938, IFO 12597, IMSNU 20121, IMSNU 21004, KCTC 9053, MTCC 1103, NBIMCC 3384, NBRC 12597, NCIMB 8594, PCM 2456, RIA 120

straininfo link

  • @ref: 82636
  • straininfo: 389270

literature

topicPubmed-IDtitleauthorsjournalyearmeshtopic2DOI
Enzymology2383149[Plasmid pSE21 of Streptomyces erythraeus strains].Grigor'ev AE, Belova TS, Naidenova MI, Danilenko VNAntibiot Khimioter1990Autoradiography, DNA, Bacterial/analysis/genetics, Electrophoresis, Agar Gel, Hybridization, Genetic/genetics, In Vitro Techniques, Plasmids/*genetics, Restriction Mapping, Streptomyces/*geneticsGenetics
Genetics2834338Site-specific integration in Saccharopolyspora erythraea and multisite integration in Streptomyces lividans of actinomycete plasmid pSE101.Brown DP, Chiang SJ, Tuan JS, Katz LJ Bacteriol1988Actinomycetales/*genetics, DNA Replication, DNA Restriction Enzymes, DNA, Bacterial/genetics, *Genetic Vectors, Nucleic Acid Hybridization, *Plasmids, *Recombination, Genetic, Streptomyces/*geneticsPhylogeny10.1128/jb.170.5.2287-2295.1988
3073187Characterization of bacteriophage phi C69 of Saccharopolyspora erythraea and demonstration of heterologous actinophage propagation by transfection of Streptomyces and Saccharopolyspora.Katz L, Chiang SJ, Tuan JS, Zablen LBJ Gen Microbiol1988Bacteriophages/*genetics, DNA, Viral, Escherichia coli, Protoplasts, Restriction Mapping, Streptomyces/*genetics, *Transfection10.1099/00221287-134-7-1765
Metabolism7923474Biosynthesis of erythromycin: origin of the methyl protons.Kajiwara M, Uegaki R, Iida K, Wada YChem Pharm Bull (Tokyo)1994Erythromycin/*biosynthesis, Magnetic Resonance Spectroscopy, Protons, Saccharopolyspora/*metabolism10.1248/cpb.42.1522
Phylogeny8020754Distribution of oxoacyl synthase homology sequences within Streptomyces DNA.Kuczek K, Mordarski M, Goodfellow MFEMS Microbiol Lett1994Amino Acid Sequence, Base Sequence, Blotting, Southern, *DNA Probes, Molecular Sequence Data, Multienzyme Complexes/*genetics, Nucleic Acid Hybridization, Polymerase Chain Reaction, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Species Specificity, Streptomyces/*enzymology/*geneticsGenetics10.1111/j.1574-6968.1994.tb06847.x
Metabolism9720036Physical-genetic map of the erythromycin-producing organism Saccharopolyspora erythraea.Reeves AR, Post DA, Vanden Boom TJMicrobiology (Reading)1998Base Composition, Chromosomes, Bacterial/chemistry, Deoxyribonucleases, Type II Site-Specific/genetics, Erythromycin/*biosynthesis, *Restriction Mapping/methods, Saccharopolyspora/*genetics/metabolism10.1099/00221287-144-8-2151
Phylogeny9918396Novel erythromycins from a recombinant Saccharopolyspora erythraea strain NRRL 2338 pIG1. I. Fermentation, isolation and biological activity.Pacey MS, Dirlam JP, Geldart RW, Leadlay PF, McArthur HA, McCormick EL, Monday RA, O'Connell TN, Staunton J, Winchester TJJ Antibiot (Tokyo)1998Anti-Bacterial Agents/chemistry/*isolation & purification/*pharmacology, Erythromycin/*analogs & derivatives/chemistry/*isolation & purification/*pharmacology, Fermentation, Microbial Sensitivity Tests, Saccharopolyspora, Structure-Activity RelationshipEnzymology10.7164/antibiotics.51.1029
Enzymology10583986A unique chitinase with dual active sites and triple substrate binding sites from the hyperthermophilic archaeon Pyrococcus kodakaraensis KOD1.Tanaka T, Fujiwara S, Nishikori S, Fukui T, Takagi M, Imanaka TAppl Environ Microbiol1999Amino Acid Sequence, Base Sequence, Binding Sites, Chitinases/*chemistry/genetics/*metabolism, Cloning, Molecular, Genomic Library, Hot Temperature, Kinetics, Molecular Sequence Data, Mutagenesis, Polymerase Chain Reaction, Pyrococcus/*enzymology/genetics, Recombinant Proteins/chemistry/isolation & purification/metabolism, Sequence Alignment, Sequence Deletion, Sequence Homology, Amino Acid, Substrate SpecificityMetabolism10.1128/AEM.65.12.5338-5344.1999
Biotechnology11870604Decreasing the hyphal branching rate of Saccharopolyspora erythraea NRRL 2338 leads to increased resistance to breakage and increased antibiotic production.Wardell JN, Stocks SM, Thomas CR, Bushell MEBiotechnol Bioeng2002Bioreactors, Drug Resistance, Bacterial/genetics, Erythromycin/*biosynthesis/isolation & purification, Fermentation, Hyphae/*cytology/*physiology, Image Processing, Computer-Assisted/methods, Mutation, Reproducibility of Results, Saccharopolyspora/*cytology/genetics/*physiology, Sensitivity and Specificity, Stress, MechanicalEnzymology10.1002/bit.10210
12838613[Development of a system of plasmid transfer in the strains Streptomyces avermitilis ATCC 31272 and Saccharopolyspora erythraea ATCC 11635 by the method of intergeneric conjugation].Voeikova TA, Emel'ianova LK, Kudriavtseva EAGenetika2003Attachment Sites, Microbiological, Chromosomes, Bacterial, *Conjugation, Genetic, Escherichia coli/cytology/genetics, Genes, Bacterial, Genetic Vectors, Plasmids/*genetics, Saccharopolyspora/cytology/*genetics, Streptomyces/cytology/*genetics, Transformation, Bacterial
18039355Complete gene expression profiling of Saccharopolyspora erythraea using GeneChip DNA microarrays.Peano C, Bicciato S, Corti G, Ferrari F, Rizzi E, Bonnal RJ, Bordoni R, Albertini A, Bernardi LR, Donadio S, De Bellis GMicrob Cell Fact200710.1186/1475-2859-6-37
Metabolism18492804Identification and functional analysis of genes controlling biosynthesis of 2-methylisoborneol.Komatsu M, Tsuda M, Omura S, Oikawa H, Ikeda HProc Natl Acad Sci U S A2008Actinobacteria/*enzymology/genetics, Amino Acid Sequence, Camphanes/*metabolism, Conserved Sequence, Cyclization, Diphosphates/metabolism, Diterpenes/metabolism, Escherichia coli/genetics, Genes, Bacterial, Intramolecular Lyases/classification/genetics/*metabolism, Markov Chains, Methylation, Methyltransferases/genetics/*metabolism, Molecular Sequence Data, Phylogeny, Recombinant Proteins/genetics/metabolism, S-Adenosylmethionine/metabolism, Sequence Alignment, Sequence Analysis, Protein, Terpenes/metabolismPhylogeny10.1073/pnas.0802312105
Phylogeny19196758Sciscionella marina gen. nov., sp. nov., a marine actinomycete isolated from a sediment in the northern South China Sea.Tian XP, Zhi XY, Qiu YQ, Zhang YQ, Tang SK, Xu LH, Zhang S, Li WJInt J Syst Evol Microbiol2009Actinomycetales/chemistry/*classification/genetics/isolation & purification, Cell Wall/chemistry, China, Geologic Sediments/*microbiology, Molecular Sequence Data, Oceans and Seas, Phylogeny, RNA, Ribosomal, 16S/genetics, Species SpecificityGenetics10.1099/ijs.0.001982-0
Phenotype19331655Phenotypes and gene expression profiles of Saccharopolyspora erythraea rifampicin-resistant (rif) mutants affected in erythromycin production.Carata E, Peano C, Tredici SM, Ferrari F, Tala A, Corti G, Bicciato S, De Bellis G, Alifano PMicrob Cell Fact2009Biotechnology10.1186/1475-2859-8-18
Metabolism20711345Identifying modules of coexpressed transcript units and their organization of Saccharopolyspora erythraea from time series gene expression profiles.Chang X, Liu S, Yu YT, Li YX, Li YYPLoS One2010Cell Proliferation, Cluster Analysis, Erythromycin/biosynthesis, *Gene Expression Profiling, *Gene Regulatory Networks, Operon/genetics, RNA, Messenger/genetics/metabolism, Saccharopolyspora/cytology/*genetics/metabolism, Transcription, Genetic10.1371/journal.pone.0012126
Genetics22401291Comparative genomics and transcriptional profiles of Saccharopolyspora erythraea NRRL 2338 and a classically improved erythromycin over-producing strain.Peano C, Tala A, Corti G, Pasanisi D, Durante M, Mita G, Bicciato S, De Bellis G, Alifano PMicrob Cell Fact2012Anti-Bacterial Agents/*biosynthesis, Bacterial Proteins/genetics/metabolism, Carbon/metabolism, Erythromycin/*biosynthesis, *Genes, Bacterial, *Genomics, Mutation, Open Reading Frames, Saccharopolyspora/*genetics/metabolism, Transcription, GeneticMetabolism10.1186/1475-2859-11-32
Metabolism22556031Characterization of new class III lantibiotics--erythreapeptin, avermipeptin and griseopeptin from Saccharopolyspora erythraea, Streptomyces avermitilis and Streptomyces griseus demonstrates stepwise N-terminal leader processing.Voller GH, Krawczyk JM, Pesic A, Krawczyk B, Nachtigall J, Sussmuth RDChembiochem2012Alanine/*analogs & derivatives/chemistry/genetics/metabolism, Amino Acid Sequence, Anti-Bacterial Agents/*chemistry/metabolism, Bacteriocins/*chemistry/genetics/metabolism, Genes, Bacterial, Mass Spectrometry, Molecular Sequence Data, Saccharopolyspora/*chemistry/genetics/metabolism, Streptomyces/*chemistry/genetics/metabolism, Streptomyces griseus/*chemistry/genetics/metabolism, Sulfides/*chemistry/metabolismGenetics10.1002/cbic.201200118
Metabolism25250723Identification and characterization of a new erythromycin biosynthetic gene cluster in Actinopolyspora erythraea YIM90600, a novel erythronolide-producing halophilic actinomycete isolated from salt field.Chen D, Feng J, Huang L, Zhang Q, Wu J, Zhu X, Duan Y, Xu ZPLoS One2014Aryl Hydrocarbon Hydroxylases/genetics/metabolism, Bacterial Proteins/genetics/metabolism, Biosynthetic Pathways, Erythromycin/*analogs & derivatives/metabolism, Genes, Bacterial, Molecular Sequence Data, *Multigene Family, Saccharopolyspora/*genetics/*metabolismGenetics10.1371/journal.pone.0108129
Enzymology26827769Lysine epsilon-aminotransferases: kinetic constants, substrate specificities, and the variation in active site residues.Seo JH, Kim EM, Chae A, Kim BGEnzyme Microb Technol2015Amino Acid Sequence, Bacterial Proteins/chemistry/genetics/metabolism, Catalytic Domain/genetics, Genetic Variation, Kinetics, L-Lysine 6-Transaminase/chemistry/genetics/*metabolism, Lysine/metabolism, Models, Molecular, Molecular Sequence Data, Nocardia/enzymology/genetics, Protein Structure, Quaternary, Recombinant Proteins/chemistry/genetics/metabolism, Rhodococcus/enzymology/genetics, Saccharopolyspora/enzymology/genetics, Sequence Homology, Amino Acid, Substrate SpecificityMetabolism10.1016/j.enzmictec.2015.12.001
Metabolism27255285Integrated omics approaches provide strategies for rapid erythromycin yield increase in Saccharopolyspora erythraea.Karnicar K, Drobnak I, Petek M, Magdevska V, Horvat J, Vidmar R, Baebler S, Rotter A, Jamnik P, Fujs S, Turk B, Fonovic M, Gruden K, Kosec G, Petkovic HMicrob Cell Fact2016Anti-Bacterial Agents/*biosynthesis/chemistry, Bacterial Proteins/metabolism, Chromatography, High Pressure Liquid, Electrophoresis, Polyacrylamide Gel, Erythromycin/*biosynthesis/chemistry, Gene Expression Profiling, Genes, Bacterial, Genomics, Mass Spectrometry, Metabolic Engineering, Proteomics, Saccharopolyspora/*metabolismEnzymology10.1186/s12934-016-0496-5
Biotechnology28324355Strain improvement and optimization studies for enhanced production of erythromycin in bagasse based medium using Saccharopolyspora erythraea MTCC 1103.Subathra Devi C, Saini A, Rastogi S, Jemimah Naine S, Mohanasrinivasan V3 Biotech201310.1007/s13205-013-0186-5
Metabolism30632732Metabolic Engineering Strategies Based on Secondary Messengers (p)ppGpp and C-di-GMP To Increase Erythromycin Yield in Saccharopolyspora erythraea.Xu Z, You D, Tang LY, Zhou Y, Ye BCACS Synth Biol2019Cyclic GMP/*analogs & derivatives/metabolism, Erythromycin/*metabolism, Gene Expression Regulation, Bacterial, Metabolic Engineering/*methods, Promoter Regions, Genetic/genetics, Saccharopolyspora/*metabolismBiotechnology10.1021/acssynbio.8b00372
Metabolism30657660Precursor Supply for Erythromycin Biosynthesis: Engineering of Propionate Assimilation Pathway Based on Propionylation Modification.You D, Wang MM, Yin BC, Ye BCACS Synth Biol2019Acyl Coenzyme A/metabolism, Bacterial Proteins/*metabolism, Erythromycin/*metabolism, Metabolic Engineering/methods, Propionates/*metabolism, Saccharopolyspora/metabolismBiotechnology10.1021/acssynbio.8b00396
Metabolism30997553Two amino acids missing of MtrA resulted in increased erythromycin level and altered phenotypes in Saccharopolyspora erythraea.Pan Q, Tong Y, Han YJ, Ye BCAppl Microbiol Biotechnol2019ATP-Binding Cassette Transporters/*genetics/*metabolism, Anti-Bacterial Agents/*biosynthesis, Bacterial Proteins/*genetics/*metabolism, Biological Transport, Drug Resistance, Bacterial, Erythromycin/*biosynthesis, Gene Expression Regulation, Bacterial, Genetic Complementation Test, Mutant Proteins/genetics/metabolism, Phenotype, Saccharopolyspora/*enzymology/growth & development/*metabolism, *Sequence DeletionPhenotype10.1007/s00253-019-09825-9
Metabolism32727097Identification and Characterization of a Novel N- and O-Glycosyltransferase from Saccharopolyspora erythraea.Gutacker F, Schmidt-Bohli YI, Strobel T, Qiu D, Jessen H, Paululat T, Bechthold AMolecules2020Amino Acid Sequence, Anthraquinones/*metabolism, Bacterial Proteins/classification/genetics/*metabolism, Genome, Bacterial, Glycosylation, Glycosyltransferases/classification/genetics/*metabolism, Saccharopolyspora/*enzymology/genetics, Sequence HomologyPhylogeny10.3390/molecules25153400

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9612Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40517)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40517
18604Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40517.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
82636Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389270.1StrainInfo: A central database for resolving microbial strain identifiers