Strain identifier

BacDive ID: 134362

Type strain: Yes

Species: Nitratireductor basaltis

Strain Designation: J3

Strain history: <- JW Bae, KRIBB

NCBI tax ID(s): 1231186 (strain), 472175 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 8.1 (current version)

General

@ref: 32617

BacDive-ID: 134362

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Nitratireductor basaltis J3 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

NCBI tax id

NCBI tax idMatching level
1231186strain
472175species

strain history

@refhistory
67770S. W. Roh J3.
67771<- JW Bae, KRIBB

doi: 10.13145/bacdive134362.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Phyllobacteriaceae
  • genus: Nitratireductor
  • species: Nitratireductor basaltis
  • full scientific name: Nitratireductor basaltis Kim et al. 2009

@ref: 32617

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Phyllobacteriaceae

genus: Nitratireductor

species: Nitratireductor basaltis

strain designation: J3

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
32617negative1.3 µm0.65 µmrod-shapedno
67771negative

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
32617positivegrowth15-45
32617positiveoptimum30mesophilic
67770positivegrowth30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
32617positivegrowth5.5-10alkaliphile
32617positiveoptimum7.75

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
32617NaClpositivegrowth0-8 %
32617NaClpositiveoptimum4 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
32617168082-dehydro-D-gluconate+carbon source
3261722599arabinose+carbon source
3261717057cellobiose+carbon source
3261733984fucose+carbon source
3261724265gluconate+carbon source
3261717754glycerol+carbon source
3261717306maltose+carbon source
3261729864mannitol+carbon source
3261728053melibiose+carbon source
32617506227N-acetylglucosamine+carbon source
3261733942ribose+carbon source
3261730911sorbitol+carbon source
3261717992sucrose+carbon source
3261718222xylose+carbon source

enzymes

@refvalueactivityec
32617alpha-galactosidase+3.2.1.22
32617catalase+1.11.1.6
32617cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
32617marine sediment
67770Black sand collected from Soesoggak beachJeju IslandRepublic of KoreaKORAsia
67771From black sandSoesoggak beach, Jeju IslandRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_5955.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_220;97_1428;98_4423;99_5955&stattab=map
  • Last taxonomy: Mesorhizobium
  • 16S sequence: EU143347
  • Sequence Identity:
  • Total samples: 797
  • soil counts: 65
  • aquatic counts: 667
  • animal counts: 43
  • plant counts: 22

Sequence information

16S sequences

  • @ref: 32617
  • description: Nitratireductor basaltis strain J3 16S ribosomal RNA gene, partial sequence
  • accession: EU143347
  • length: 1342
  • database: nuccore
  • NCBI tax ID: 1231186

GC content

@refGC-contentmethod
3261756.7
6777055.4-58thermal denaturation, midpoint method (Tm)

External links

@ref: 32617

culture collection no.: KCTC 22119, JCM 14935

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19126737Nitratireductor basaltis sp. nov., isolated from black beach sand.Kim KH, Roh SW, Chang HW, Nam YD, Yoon JH, Jeon CO, Oh HM, Bae JWInt J Syst Evol Microbiol10.1099/ijs.0.65784-02009Alphaproteobacteria/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Korea, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, *Silicon Dioxide, *Soil Microbiology, Species SpecificityTranscriptome
Phylogeny32589575Nitratireductor alexandrii sp. nov., from phycosphere microbiota of toxic marine dinoflagellate Alexandrium tamarense.Jiang Z, Duan Y, Yang X, Yao B, Zeng T, Wang X, Feng Q, Qi M, Yang Q, Zhang XInt J Syst Evol Microbiol10.1099/ijsem.0.0043022020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Dinoflagellida/*microbiology, Fatty Acids/chemistry, Microbiota, Nucleic Acid Hybridization, Phospholipids/chemistry, Phyllobacteriaceae/*classification/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmedjournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32617Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172882928776041
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa102533211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/