Strain identifier
BacDive ID: 134354
Type strain:
Species: Marinomonas arctica
Strain Designation: 328
Strain history: D.-C. Zhang 328.
NCBI tax ID(s): 383750 (species)
version 8.1 (current version)
General
@ref: 32590
BacDive-ID: 134354
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Marinomonas arctica 328 is an aerobe, Gram-negative, motile bacterium that was isolated from sea-ice samples.
NCBI tax id
- NCBI tax id: 383750
- Matching level: species
strain history
- @ref: 67770
- history: D.-C. Zhang 328.
doi: 10.13145/bacdive134354.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Oceanospirillaceae
- genus: Marinomonas
- species: Marinomonas arctica
- full scientific name: Marinomonas arctica Zhang et al. 2008
@ref: 32590
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Oceanospirillaceae
genus: Marinomonas
species: Marinomonas arctica
strain designation: 328
type strain: yes
Morphology
cell morphology
- @ref: 32590
- gram stain: negative
- cell length: 1.2-2.6 µm
- cell width: 0.3-0.4 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 32590
- production: yes
Culture and growth conditions
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
32590 | positive | growth | 0-37 | |
32590 | positive | optimum | 25-27 | mesophilic |
67770 | positive | growth | 25 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
32590 | positive | growth | 05-10 | alkaliphile |
32590 | positive | optimum | 06-09 |
Physiology and metabolism
oxygen tolerance
- @ref: 32590
- oxygen tolerance: aerobe
spore formation
- @ref: 32590
- spore formation: no
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
32590 | NaCl | positive | growth | 0-12 % |
32590 | NaCl | positive | optimum | 0-12 % |
observation
- @ref: 32590
- observation: aggregates in chains
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
32590 | 16449 | alanine | + | carbon source |
32590 | 22599 | arabinose | + | carbon source |
32590 | 17057 | cellobiose | + | carbon source |
32590 | 28757 | fructose | + | carbon source |
32590 | 28260 | galactose | + | carbon source |
32590 | 24265 | gluconate | + | carbon source |
32590 | 17234 | glucose | + | carbon source |
32590 | 17754 | glycerol | + | carbon source |
32590 | 27570 | histidine | + | carbon source |
32590 | 25115 | malate | + | carbon source |
32590 | 17306 | maltose | + | carbon source |
32590 | 29864 | mannitol | + | carbon source |
32590 | 37684 | mannose | + | carbon source |
32590 | 28053 | melibiose | + | carbon source |
32590 | 18401 | phenylacetate | + | carbon source |
32590 | 26271 | proline | + | carbon source |
32590 | 16634 | raffinose | + | carbon source |
32590 | 26546 | rhamnose | + | carbon source |
32590 | 30911 | sorbitol | + | carbon source |
32590 | 17992 | sucrose | + | carbon source |
32590 | 18222 | xylose | + | carbon source |
enzymes
@ref | value | activity | ec |
---|---|---|---|
32590 | catalase | + | 1.11.1.6 |
32590 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
32590 | sea-ice samples |
67770 | The Canadian Basin in the Arctic |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Ice |
#Environmental | #Aquatic | #Marine |
taxonmaps
- @ref: 69479
- File name: preview.99_16241.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_113;96_407;97_932;98_12246;99_16241&stattab=map
- Last taxonomy: Marinomonas
- 16S sequence: DQ492749
- Sequence Identity:
- Total samples: 1842
- soil counts: 53
- aquatic counts: 1259
- animal counts: 467
- plant counts: 63
Sequence information
16S sequences
- @ref: 32590
- description: Marinomonas arctica strain 328 16S ribosomal RNA gene, partial sequence
- accession: DQ492749
- length: 1465
- database: nuccore
- NCBI tax ID: 383750
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Marinomonas arctica CGMCC 1.6498 | GCA_014645175 | scaffold | ncbi | 383750 |
66792 | Marinomonas arctica strain CGMCC 1.6498 | 383750.7 | wgs | patric | 383750 |
66792 | Marinomonas arctica 328 | 2837145084 | draft | img | 383750 |
67770 | Marinomonas arctica 328 | GCA_003259225 | contig | ncbi | 383750 |
GC content
@ref | GC-content | method |
---|---|---|
32590 | 45.2 | |
67770 | 45.2 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | yes | 93.734 | no |
gram-positive | no | 98.247 | yes |
anaerobic | no | 96.872 | yes |
aerobic | yes | 90.328 | yes |
halophile | yes | 69.331 | no |
spore-forming | no | 94.075 | yes |
thermophile | no | 99.733 | yes |
glucose-util | yes | 94.197 | yes |
motile | yes | 93.698 | yes |
glucose-ferment | no | 76.245 | no |
External links
@ref: 32590
culture collection no.: CGMCC 1.6498, JCM 14976
literature
- topic: Phylogeny
- Pubmed-ID: 18599722
- title: Marinomonas arctica sp. nov., a psychrotolerant bacterium isolated from the Arctic.
- authors: Zhang DC, Li HR, Xin YH, Liu HC, Chen B, Chi ZM, Zhou PJ, Yu Y
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65737-0
- year: 2008
- mesh: Arctic Regions, *Cold Temperature, Ice Cover/*microbiology, Marinomonas/*classification/genetics/isolation & purification, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity
- topic2: Genetics
Reference
@id | authors | title | doi/url | ID_cross_reference | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
32590 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28803 | 28776041 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |