Strain identifier

BacDive ID: 134354

Type strain: Yes

Species: Marinomonas arctica

Strain Designation: 328

Strain history: D.-C. Zhang 328.

NCBI tax ID(s): 383750 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 32590

BacDive-ID: 134354

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Marinomonas arctica 328 is an aerobe, Gram-negative, motile bacterium that was isolated from sea-ice samples.

NCBI tax id

  • NCBI tax id: 383750
  • Matching level: species

strain history

  • @ref: 67770
  • history: D.-C. Zhang 328.

doi: 10.13145/bacdive134354.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Oceanospirillaceae
  • genus: Marinomonas
  • species: Marinomonas arctica
  • full scientific name: Marinomonas arctica Zhang et al. 2008

@ref: 32590

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Oceanospirillaceae

genus: Marinomonas

species: Marinomonas arctica

strain designation: 328

type strain: yes

Morphology

cell morphology

  • @ref: 32590
  • gram stain: negative
  • cell length: 1.2-2.6 µm
  • cell width: 0.3-0.4 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 32590
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
32590positivegrowth0-37
32590positiveoptimum25-27mesophilic
67770positivegrowth25mesophilic

culture pH

@refabilitytypepHPH range
32590positivegrowth05-10alkaliphile
32590positiveoptimum06-09

Physiology and metabolism

oxygen tolerance

  • @ref: 32590
  • oxygen tolerance: aerobe

spore formation

  • @ref: 32590
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
32590NaClpositivegrowth0-12 %
32590NaClpositiveoptimum0-12 %

observation

  • @ref: 32590
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3259016449alanine+carbon source
3259022599arabinose+carbon source
3259017057cellobiose+carbon source
3259028757fructose+carbon source
3259028260galactose+carbon source
3259024265gluconate+carbon source
3259017234glucose+carbon source
3259017754glycerol+carbon source
3259027570histidine+carbon source
3259025115malate+carbon source
3259017306maltose+carbon source
3259029864mannitol+carbon source
3259037684mannose+carbon source
3259028053melibiose+carbon source
3259018401phenylacetate+carbon source
3259026271proline+carbon source
3259016634raffinose+carbon source
3259026546rhamnose+carbon source
3259030911sorbitol+carbon source
3259017992sucrose+carbon source
3259018222xylose+carbon source

enzymes

@refvalueactivityec
32590catalase+1.11.1.6
32590cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample type
32590sea-ice samples
67770The Canadian Basin in the Arctic

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Ice
#Environmental#Aquatic#Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_16241.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_113;96_407;97_932;98_12246;99_16241&stattab=map
  • Last taxonomy: Marinomonas
  • 16S sequence: DQ492749
  • Sequence Identity:
  • Total samples: 1842
  • soil counts: 53
  • aquatic counts: 1259
  • animal counts: 467
  • plant counts: 63

Sequence information

16S sequences

  • @ref: 32590
  • description: Marinomonas arctica strain 328 16S ribosomal RNA gene, partial sequence
  • accession: DQ492749
  • length: 1465
  • database: nuccore
  • NCBI tax ID: 383750

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Marinomonas arctica CGMCC 1.6498GCA_014645175scaffoldncbi383750
66792Marinomonas arctica strain CGMCC 1.6498383750.7wgspatric383750
66792Marinomonas arctica 3282837145084draftimg383750
67770Marinomonas arctica 328GCA_003259225contigncbi383750

GC content

@refGC-contentmethod
3259045.2
6777045.2high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes93.734no
gram-positiveno98.247yes
anaerobicno96.872yes
aerobicyes90.328yes
halophileyes69.331no
spore-formingno94.075yes
thermophileno99.733yes
glucose-utilyes94.197yes
motileyes93.698yes
glucose-fermentno76.245no

External links

@ref: 32590

culture collection no.: CGMCC 1.6498, JCM 14976

literature

  • topic: Phylogeny
  • Pubmed-ID: 18599722
  • title: Marinomonas arctica sp. nov., a psychrotolerant bacterium isolated from the Arctic.
  • authors: Zhang DC, Li HR, Xin YH, Liu HC, Chen B, Chi ZM, Zhou PJ, Yu Y
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65737-0
  • year: 2008
  • mesh: Arctic Regions, *Cold Temperature, Ice Cover/*microbiology, Marinomonas/*classification/genetics/isolation & purification, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32590Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172880328776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/