Strain identifier

BacDive ID: 134354

Type strain: Yes

Species: Marinomonas arctica

Strain Designation: 328

Culture col. no.: CGMCC 1.6498, JCM 14976

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General

@ref: 32590

BacDive-ID: 134354

keywords: motile, gram-negative, aerobe, Bacteria, 16S sequence, genome sequence, rod-shaped

description: Marinomonas arctica 328 is an aerobe, gram-negative, motile bacterium that was isolated from sea-ice samples.

doi: 10.13145/bacdive134354.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Oceanospirillaceae
  • genus: Marinomonas
  • species: Marinomonas arctica
  • full scientific name: Marinomonas arctica Zhang et al. 2008

@ref: 32590

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Oceanospirillaceae

genus: Marinomonas

species: Marinomonas arctica

strain designation: 328

type strain: yes

Morphology

cell morphology

  • @ref: 32590
  • gram stain: negative
  • cell length: 1.2-2.6 µm
  • cell width: 0.3-0.4 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 32590
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
32590positivegrowth0-37
32590positiveoptimum25-27mesophilic

culture pH

@refabilitytypepH
32590positivegrowth05-10
32590positiveoptimum06-09

Physiology and metabolism

oxygen tolerance

  • @ref: 32590
  • oxygen tolerance: aerobe

spore formation

  • @ref: 32590
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
32590NaClpositivegrowth0-12 %
32590NaClpositiveoptimum0-12 %

observation

  • @ref: 32590
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3259016449alanine+carbon source
3259022599arabinose+carbon source
3259017057cellobiose+carbon source
3259028757fructose+carbon source
3259028260galactose+carbon source
3259024265gluconate+carbon source
3259017234glucose+carbon source
3259017754glycerol+carbon source
3259027570histidine+carbon source
3259025115malate+carbon source
3259017306maltose+carbon source
3259029864mannitol+carbon source
3259037684mannose+carbon source
3259028053melibiose+carbon source
3259018401phenylacetate+carbon source
3259026271proline+carbon source
3259016634raffinose+carbon source
3259026546rhamnose+carbon source
3259030911sorbitol+carbon source
3259017992sucrose+carbon source
3259018222xylose+carbon source

enzymes

@refvalueactivityec
32590catalase+1.11.1.6
32590cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 32590
  • sample type: sea-ice samples

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Ice
#Environmental#Aquatic#Marine

Sequence information

16S sequences

  • @ref: 32590
  • description: Marinomonas arctica strain 328 16S ribosomal RNA gene, partial sequence
  • accession: DQ492749
  • length: 1465
  • database: nuccore
  • NCBI tax ID: 383750

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Marinomonas arctica 328GCA_003259225contigncbi383750
66792Marinomonas arctica strain 328383750.3wgspatric383750

GC content

  • @ref: 32590
  • GC-content: 45.2

External links

@ref: 32590

culture collection no.: CGMCC 1.6498, JCM 14976

straininfo link

@refpassport
20218http://www.straininfo.net/strains/833377
20218http://www.straininfo.net/strains/833378

Reference

@idauthorstitledoi/urljournalpubmedID_cross_reference
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
2880310.1099/ijs.0.65737-0
32590Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-1728803
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes