Strain identifier
BacDive ID: 134345
Type strain: 
Species: Robinsoniella peoriensis
Strain Designation: PPC31
NCBI tax ID(s): 180332 (species)
version 9.2 (current version)
General
@ref: 32552
BacDive-ID: 134345
keywords: 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, Gram-positive, ovoid-shaped
description: Robinsoniella peoriensis PPC31 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from Swine manure,storage pit.
NCBI tax id
- NCBI tax id: 180332
- Matching level: species
doi: 10.13145/bacdive134345.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Robinsoniella
- species: Robinsoniella peoriensis
- full scientific name: Robinsoniella peoriensis Cotta et al. 2009
@ref: 32552
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Lachnospiraceae
genus: Robinsoniella
species: Robinsoniella peoriensis
strain designation: PPC31
type strain: yes
Morphology
cell morphology
- @ref: 32552
- gram stain: positive
- cell shape: ovoid-shaped
- motility: no
Culture and growth conditions
culture temp
- @ref: 58309
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 32552 | anaerobe |
| 58309 | anaerobe |
spore formation
- @ref: 32552
- spore formation: yes
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32552 | 22599 | arabinose | + | carbon source |
| 32552 | 17057 | cellobiose | + | carbon source |
| 32552 | 17234 | glucose | + | carbon source |
| 32552 | 17716 | lactose | + | carbon source |
| 32552 | 17306 | maltose | + | carbon source |
| 32552 | 16634 | raffinose | + | carbon source |
| 32552 | 18222 | xylose | + | carbon source |
| 32552 | 4853 | esculin | + | hydrolysis |
enzymes
- @ref: 32552
- value: acid phosphatase
- activity: +
- ec: 3.1.3.2
Isolation, sampling and environmental information
isolation
- @ref: 58309
- sample type: Swine manure,storage pit
- sampling date: 1998-07-01
- geographic location: IL
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Mammals | #Suidae (Pig,Swine) |
taxonmaps
- @ref: 69479
- File name: preview.99_28.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_23;97_24;98_27;99_28&stattab=map
- Last taxonomy: Robinsoniella peoriensis subclade
- 16S sequence: AF445285
- Sequence Identity:
- Total samples: 36989
- soil counts: 434
- aquatic counts: 661
- animal counts: 35702
- plant counts: 192
Sequence information
16S sequences
- @ref: 32552
- description: Robinsoniella peoriensis strain PPC31 16S ribosomal RNA gene, complete sequence
- accession: AF445285
- length: 1525
- database: nuccore
- NCBI tax ID: 180332
GC content
- @ref: 32552
- GC-content: 48.7
External links
@ref: 32552
culture collection no.: CCUG 48729, NRRL B-23985
straininfo link
- @ref: 91906
- straininfo: 411539
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19126740 | Robinsoniella peoriensis gen. nov., sp. nov., isolated from a swine-manure storage pit and a human clinical source. | Cotta MA, Whitehead TR, Falsen E, Moore E, Lawson PA | Int J Syst Evol Microbiol | 10.1099/ijs.0.65676-0 | 2009 | Animals, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Gram-Positive Bacterial Infections/*microbiology, Gram-Positive Endospore-Forming Bacteria/*classification/genetics/*isolation & purification/metabolism, Humans, Manure/*microbiology, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Swine/*microbiology | Pathogenicity |
| Phylogeny | 26612136 | Lachnotalea glycerini gen. nov., sp. nov., an anaerobe isolated from a nanofiltration unit treating anoxic groundwater. | Jarzembowska M, Sousa DZ, Beyer F, Zwijnenburg A, Plugge CM, Stams AJM | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000791 | 2015 | ||
| Phylogeny | 31038448 | Anaerosacchariphilus polymeriproducens gen. nov., sp. nov., an anaerobic bacterium isolated from a salt field. | Kim W, Yang SH, Park MJ, Oh J, Lee JH, Kwon KK | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003404 | 2019 | Bacterial Typing Techniques, Base Composition, Clostridiales/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Phospholipids/chemistry, *Phylogeny, Ponds, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Sodium Chloride | Transcriptome |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 32552 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28770 | 28776041 | |
| 58309 | Curators of the CCUG | https://www.ccug.se/strain?id=48729 | Culture Collection University of Gothenburg (CCUG) (CCUG 48729) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 91906 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID411539.1 |