Strain identifier

BacDive ID: 134337

Type strain: Yes

Species: Cereibacter ovatus

Strain Designation: JA234

Strain history: Ch. Sasikala JA234.

NCBI tax ID(s): 439529 (species)

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General

@ref: 32521

BacDive-ID: 134337

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, ovoid-shaped

description: Cereibacter ovatus JA234 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from freshwater sediment .

NCBI tax id

  • NCBI tax id: 439529
  • Matching level: species

strain history

  • @ref: 67770
  • history: Ch. Sasikala JA234.

doi: 10.13145/bacdive134337.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Paracoccaceae
  • genus: Cereibacter
  • species: Cereibacter ovatus
  • full scientific name: Cereibacter ovatus (Srinivas et al. 2008) Hördt et al. 2020

  • synonyms

    @refsynonym
    20215Luteovulum ovatum
    20215Rhodobacter ovatus

@ref: 32521

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Rhodobacter

species: Rhodobacter ovatus

strain designation: JA234

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
32521negative1.5 µm1.05 µmovoid-shapedno
69480negative99.999

colony morphology

  • @ref: 60437
  • incubation period: 3 days

pigmentation

  • @ref: 32521
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
32521positivegrowth25-35mesophilic
32521positiveoptimum30mesophilic
60437positivegrowth30mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepH
32521positivegrowth06-08
32521positiveoptimum6.75

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
32521facultative anaerobe
60437aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.947

halophily

  • @ref: 32521
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <1 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3252117754glycerol+carbon source
3252115361pyruvate+carbon source

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
32521freshwater sediment (river, lake, pond)
60437Water,industrially polluted fresh water pond2006-01-20Hyderabad,Rasendra? NagarIndiaINDAsia
67770Sediment from an industrially polleted pond (Noor Mohammad Kunta) in HyderabadIndiaINDAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#Lake (large)
#Environmental#Aquatic#Pond (small)
#Environmental#Aquatic#River (Creek)

Sequence information

16S sequences

  • @ref: 32521
  • description: Rhodobacter ovatus partial 16S rRNA gene, type strain JA234T
  • accession: AM690348
  • length: 1381
  • database: nuccore
  • NCBI tax ID: 439529

Genome sequences

  • @ref: 66792
  • description: Cereibacter ovatus JA234
  • accession: GCA_900207575
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 439529

GC content

@refGC-contentmethod
3252170.06
6777070.06high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes54no
motileyes63.101yes
flagellatedno83.504yes
gram-positiveno99.116yes
anaerobicno65.793no
aerobicno74.944no
halophileno87.403yes
spore-formingno95.544no
thermophileno92.528no
glucose-utilyes81.562no
glucose-fermentno90.766no

External links

@ref: 32521

culture collection no.: JCM 14779, CCUG 55049

straininfo link

  • @ref: 91901
  • straininfo: 410955

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcataloguejournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32521Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172874028776041
60437Curators of the CCUGhttps://www.ccug.se/strain?id=55049Culture Collection University of Gothenburg (CCUG) (CCUG 55049)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa102533211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
91901Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID410955.1