Strain identifier
BacDive ID: 134336
Type strain: 
Species: Colwellia polaris
Strain Designation: 537
Strain history: D.-C. Zhang and P.-J. Zhou 537.
NCBI tax ID(s): 326537 (species)
version 8.1 (current version)
General
@ref: 32508
BacDive-ID: 134336
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Colwellia polaris 537 is an aerobe, Gram-negative, motile bacterium that was isolated from sea-ice samples.
NCBI tax id
- NCBI tax id: 326537
- Matching level: species
strain history
- @ref: 67770
- history: D.-C. Zhang and P.-J. Zhou 537.
doi: 10.13145/bacdive134336.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Colwelliaceae
- genus: Colwellia
- species: Colwellia polaris
- full scientific name: Colwellia polaris Zhang et al. 2008
synonyms
- @ref: 20215
- synonym: Cognaticolwellia polaris
@ref: 32508
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Colwelliaceae
genus: Colwellia
species: Colwellia polaris
strain designation: 537
type strain: yes
Morphology
cell morphology
- @ref: 32508
- gram stain: negative
- cell length: 0.9-4 µm
- cell width: 0.6-0.9 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 32508
- production: no
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 32508 | positive | growth | 04-26 | |
| 32508 | positive | optimum | 20-21 | psychrophilic |
| 67770 | positive | growth | 21 | psychrophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32508 | positive | growth | 05-10 | alkaliphile |
| 32508 | positive | optimum | 06-09 |
Physiology and metabolism
oxygen tolerance
- @ref: 32508
- oxygen tolerance: aerobe
spore formation
- @ref: 32508
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 32508 | NaCl | positive | growth | 01-06 % |
| 32508 | NaCl | positive | optimum | 01-06 % |
observation
| @ref | observation |
|---|---|
| 32508 | aggregates in chains |
| 67770 | quinones: Q-8 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32508 | 22599 | arabinose | + | carbon source |
| 32508 | 28757 | fructose | + | carbon source |
| 32508 | 28260 | galactose | + | carbon source |
| 32508 | 17234 | glucose | + | carbon source |
| 32508 | 17754 | glycerol | + | carbon source |
| 32508 | 29864 | mannitol | + | carbon source |
| 32508 | 37684 | mannose | + | carbon source |
| 32508 | 28053 | melibiose | + | carbon source |
| 32508 | 15361 | pyruvate | + | carbon source |
| 32508 | 30911 | sorbitol | + | carbon source |
| 32508 | 17992 | sucrose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 32508 | catalase | + | 1.11.1.6 |
| 32508 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 32508 | sea-ice samples |
| 67770 | Sea ice collected from the Canadian Basin in the Arctic Ocean |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Ice |
| #Environmental | #Aquatic | #Marine |
taxonmaps
- @ref: 69479
- File name: preview.99_6518.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_82;96_438;97_1201;98_4190;99_6518&stattab=map
- Last taxonomy: Colwellia polaris
- 16S sequence: DQ007434
- Sequence Identity:
- Total samples: 317
- aquatic counts: 286
- animal counts: 28
- plant counts: 3
Sequence information
16S sequences
- @ref: 32508
- description: Colwellia polaris strain 537 16S ribosomal RNA gene, partial sequence
- accession: DQ007434
- length: 1501
- database: nuccore
- NCBI tax ID: 326537
GC content
| @ref | GC-content | method |
|---|---|---|
| 32508 | 38.9 | |
| 67770 | 38.9 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 32508
culture collection no.: CGMCC 1.6132, JCM 13952
literature
- topic: Phylogeny
- Pubmed-ID: 18676483
- title: Colwellia polaris sp. nov., a psychrotolerant bacterium isolated from Arctic sea ice.
- authors: Zhang DC, Yu Y, Xin YH, Liu HC, Zhou PJ, Zhou YG
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65596-0
- year: 2008
- mesh: Arctic Regions, Bacterial Typing Techniques, Base Composition, *Cold Temperature, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Gammaproteobacteria/*classification/genetics/isolation & purification/physiology, Genes, rRNA, *Ice, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Species Specificity
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 32508 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28728 | 28776041 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |