Strain identifier
BacDive ID: 134334
Type strain: 
Species: Fulvibacter tottoriensis
Strain Designation: MTT-39
NCBI tax ID(s): 426599 (species)
version 8.1 (current version)
General
@ref: 32478
BacDive-ID: 134334
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Fulvibacter tottoriensis MTT-39 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 426599
- Matching level: species
doi: 10.13145/bacdive134334.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Fulvibacter
- species: Fulvibacter tottoriensis
- full scientific name: Fulvibacter tottoriensis Khan et al. 2008
@ref: 32478
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Fulvibacter
species: Fulvibacter tottoriensis
strain designation: MTT-39
type strain: yes
Morphology
cell morphology
- @ref: 32478
- gram stain: negative
- cell length: 05-14 µm
- cell width: 0.5-0.7 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 32478
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 32478 | positive | growth | 10-37 | |
| 32478 | positive | optimum | 25-30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32478 | positive | growth | 06-10 | alkaliphile |
| 32478 | positive | optimum | 07-09 |
Physiology and metabolism
oxygen tolerance
- @ref: 32478
- oxygen tolerance: aerobe
spore formation
- @ref: 32478
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 32478 | NaCl | positive | growth | 01-05 % |
| 32478 | NaCl | positive | optimum | 01-05 % |
observation
- @ref: 32478
- observation: aggregates in chains
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32478 | 29987 | glutamate | + | carbon source |
| 32478 | 15361 | pyruvate | + | carbon source |
enzymes
- @ref: 32478
- value: cytochrome oxidase
- activity: +
- ec: 1.9.3.1
Isolation, sampling and environmental information
isolation
- @ref: 32478
- sample type: marine sediment
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_47251.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_107;96_21462;97_26797;98_34098;99_47251&stattab=map
- Last taxonomy: Fulvibacter tottoriensis subclade
- 16S sequence: AB294107
- Sequence Identity:
- Total samples: 478
- soil counts: 7
- aquatic counts: 386
- animal counts: 84
- plant counts: 1
Sequence information
16S sequences
- @ref: 32478
- description: Fulvibacter tottoriensis gene for 16S rRNA, partial sequence
- accession: AB294107
- length: 1408
- database: nuccore
- NCBI tax ID: 426599
GC content
- @ref: 32478
- GC-content: 35
External links
@ref: 32478
culture collection no.: NBRC 102624, KCTC 22214, CGMCC 1.7058
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 18599714 | Fulvibacter tottoriensis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from marine sediment. | Khan ST, Nakagawa Y, Harayama S | Int J Syst Evol Microbiol | 10.1099/ijs.0.65554-0 | 2008 | Fatty Acids/metabolism, Flavobacteriaceae/chemistry/*classification/genetics/*isolation & purification, Geologic Sediments/*microbiology, Japan, Molecular Sequence Data, Oceans and Seas, Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity | Genetics |
| Phylogeny | 22904231 | Pseudofulvibacter geojedonensis gen. nov., sp. nov., a polysaccharide-degrading member of the family Flavobacteriaceae isolated from seawater, and emended description of the genus Fulvibacter. | Yoon JH, Lee MH, Jung YT | Int J Syst Evol Microbiol | 10.1099/ijs.0.043513-0 | 2012 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Phosphatidylethanolamines/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis | Genetics |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 32478 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28698 | 28776041 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |