Strain identifier

BacDive ID: 134323

Type strain: Yes

Species: Chryseobacterium aquaticum

Strain Designation: Oct-46, 10-46

Strain history: <- JS Lee, KRIBB

NCBI tax ID(s): 452084 (species)

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General

@ref: 32435

BacDive-ID: 134323

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Chryseobacterium aquaticum Oct-46 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Water reservoir.

NCBI tax id

  • NCBI tax id: 452084
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- JS Lee, KRIBB

doi: 10.13145/bacdive134323.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium aquaticum
  • full scientific name: Chryseobacterium aquaticum Kim et al. 2008

@ref: 32435

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Chryseobacterium

species: Chryseobacterium aquaticum

strain designation: Oct-46, 10-46

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
32435negative1.4 µm0.45 µmrod-shapedno
67771rod-shapedno
67771negative

pigmentation

  • @ref: 32435
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
32435positivegrowth05-37
32435positiveoptimum27.5mesophilic
67771positivegrowth25-30mesophilic

culture pH

@refabilitytypepH
32435positivegrowth06-08
32435positiveoptimum6.5

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

@refspore formation
32435no
67771no

halophily

  • @ref: 32435
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <3 %

observation

  • @ref: 67771
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
32435620642,3-butanediol+carbon source
3243530089acetate+carbon source
3243515963ribitol+carbon source
3243521217L-alaninamide+carbon source
3243516449alanine+carbon source
3243540585alpha-cyclodextrin+carbon source
3243522599arabinose+carbon source
3243518403L-arabitol+carbon source
3243522653asparagine+carbon source
3243535391aspartate+carbon source
3243517057cellobiose+carbon source
3243523652dextrin+carbon source
3243515740formate+carbon source
3243528757fructose+carbon source
3243528260galactose+carbon source
3243524175galacturonate+carbon source
3243524265gluconate+carbon source
3243517234glucose+carbon source
3243529987glutamate+carbon source
3243528087glycogen+carbon source
3243525017leucine+carbon source
3243517306maltose+carbon source
3243537684mannose+carbon source
3243528053melibiose+carbon source
3243551850methyl pyruvate+carbon source
3243517268myo-inositol+carbon source
3243518257ornithine+carbon source
3243528044phenylalanine+carbon source
3243526271proline+carbon source
3243517272propionate+carbon source
3243516634raffinose+carbon source
3243526546rhamnose+carbon source
3243517822serine+carbon source
3243530911sorbitol+carbon source
3243530031succinate+carbon source
3243517992sucrose+carbon source
3243526986threonine+carbon source
3243527082trehalose+carbon source
3243553423tween 40+carbon source
3243553426tween 80+carbon source
3243516704uridine+carbon source
3243517151xylitol+carbon source
324354853esculin+hydrolysis

enzymes

@refvalueactivityec
32435catalase+1.11.1.6
32435gelatinase+
32435cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
32435Water reservoir
67771From reservoirBuyeoRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment#Water reservoir (Aquarium/pool)
#Environmental#Aquatic

taxonmaps

  • @ref: 69479
  • File name: preview.99_5786.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_76;96_206;97_1157;98_4305;99_5786&stattab=map
  • Last taxonomy: Chryseobacterium
  • 16S sequence: AM748690
  • Sequence Identity:
  • Total samples: 2282
  • soil counts: 242
  • aquatic counts: 756
  • animal counts: 969
  • plant counts: 315

Sequence information

16S sequences

  • @ref: 32435
  • description: Chryseobacterium aquaticum partial 16S rRNA gene, type strain 10-46T
  • accession: AM748690
  • length: 1426
  • database: nuccore
  • NCBI tax ID: 452084

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Chryseobacterium aquaticum KCTC 12483GCA_001420285contigncbi452084
66792Chryseobacterium aquaticum strain KCTC 12483452084.6wgspatric452084
66792Chryseobacterium aquaticum KCTC 124832713896886draftimg452084

GC content

@refGC-content
3243538.3-38.5
6777138.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno98.358yes
anaerobicno99.407yes
halophileno94.748no
spore-formingno95.52yes
glucose-utilyes86.843no
aerobicyes92.177yes
flagellatedno96.993no
thermophileno99.364no
motileno91.535no
glucose-fermentno93.398no

External links

@ref: 32435

culture collection no.: KCTC 12483, CECT 7302

straininfo link

  • @ref: 91898
  • straininfo: 343442

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18319450Chryseobacterium aquaticum sp. nov., isolated from a water reservoir.Kim KK, Lee KC, Oh HM, Lee JSInt J Syst Evol Microbiol10.1099/ijs.0.65491-02008Bacterial Typing Techniques, Chryseobacterium/*classification/genetics/isolation & purification/physiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Fresh Water/*microbiology, Genes, rRNA, Genotype, Korea, Molecular Sequence Data, Phenotype, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species SpecificityGenetics
Phylogeny20584811Chryseobacterium xinjiangense sp. nov., isolated from alpine permafrost.Zhao Q, Bai Y, Zhang G, Zhu S, Sheng H, Sun Y, An LInt J Syst Evol Microbiol10.1099/ijs.0.024141-02010Aerobiosis, Base Composition, China, Chryseobacterium/*classification/genetics/*isolation & purification/physiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, TemperatureGenetics
Phylogeny26286270Chryseobacterium echinoideorum sp. nov., isolated from sea urchins (Tripneustes gratilla).Lin SY, Hameed A, Wen CZ, Liu YC, Shen FT, Hsu YH, Lai WA, Young CCInt J Syst Evol Microbiol10.1099/ijsem.0.0005242015Animals, Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sea Urchins/*microbiology, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Taiwan, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny29458480Chryseobacterium glaciei sp. nov., isolated from the surface of a glacier in the Indian trans-Himalayas.Pal M, Kumari M, Kiran S, Salwan R, Mayilraj S, Chhibber S, Gulati AInt J Syst Evol Microbiol10.1099/ijsem.0.0026002018Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ice Cover/*microbiology, India, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32435Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172865728776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91898Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID343442.1