Strain identifier

BacDive ID: 134320

Type strain: Yes

Species: Streptacidiphilus anmyonensis

Strain Designation: AM11

Strain history: <- SB Kim, Chungnam Natl. Univ.

NCBI tax ID(s): 405782 (species)

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General

@ref: 64722

BacDive-ID: 134320

DSM-Number: 108658

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Streptacidiphilus anmyonensis AM11 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 405782
  • Matching level: species

strain history

@refhistory
64722<- NBRC; NBRC 103185 <- S. B. Kim and S. H. Cho, Chungnam National University, Korea; AM11
67770KCTC 19278 <-- S. B. Kim AM11.
67771<- SB Kim, Chungnam Natl. Univ.

doi: 10.13145/bacdive134320.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptacidiphilus
  • species: Streptacidiphilus anmyonensis
  • full scientific name: Streptacidiphilus anmyonensis Cho et al. 2008

@ref: 64722

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptacidiphilus

species: Streptacidiphilus anmyonensis

full scientific name: Streptacidiphilus anmyonensis Cho et al. 2008 emend. Nouioui et al. 2018

strain designation: AM11

type strain: yes

Morphology

cell morphology

@refgram stainconfidencemotility
67771positive
125438positive93.26
125439positive99.8
12543990.5no

pigmentation

  • @ref: 32427
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
64722ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
64722GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
64722ISP2 MEDIUM (DSMZ Medium 987)yeshttps://mediadive.dsmz.de/medium/987Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
64722positivegrowth28
32427positivegrowth28-35
67770positivegrowth28
67771positivegrowth30

culture pH

  • @ref: 32427
  • ability: positive
  • type: growth
  • pH: 06-08

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
67771aerobe
125439obligate aerobe98.7

spore formation

@refspore formationconfidence
32427yes
125439yes93.3

observation

  • @ref: 67770
  • observation: quinones: MK-9(H8), MK-9(H6)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3242729016arginine+carbon source
3242724265gluconate+carbon source
3242717754glycerol+carbon source
3242728053melibiose+carbon source
3242717268myo-inositol+carbon source
3242730911sorbitol+carbon source
3242717992sucrose+carbon source
3242718222xylose+carbon source

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinenthost species
32427soil
64722soil of Pinus thunbergiiAnmyeon, Tae-an, ChungnamRepublic of KoreaKORAsia
67770Pinus-associated soilAnmyeon, near the coastal areas of Tae-An, ChungnamRepublic of KoreaKORAsiaPinus
67771From `Pinus` soilRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_3777.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_1291;97_2062;98_2532;99_3777&stattab=map
  • Last taxonomy: Streptacidiphilus
  • 16S sequence: DQ904546
  • Sequence Identity:
  • Total samples: 486
  • soil counts: 433
  • aquatic counts: 17
  • animal counts: 19
  • plant counts: 17

Safety information

risk assessment

  • @ref: 64722
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 64722
  • description: Streptacidiphilus anmyonensis strain AM-11 16S ribosomal RNA gene, partial sequence
  • accession: DQ904546
  • length: 1383
  • database: nuccore
  • NCBI tax ID: 405782

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptacidiphilus anmyonensis NBRC 103185405782.3wgspatric405782
66792Streptacidiphilus anmyonensis NBRC 1031852671180344draftimg405782
67770Streptacidiphilus anmyonensis NBRC 103185GCA_000787855scaffoldncbi405782

GC content

  • @ref: 67770
  • GC-content: 72.2
  • method: genome sequence analysis

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes93.26no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no94.304yes
125438spore-formingspore-formingAbility to form endo- or exosporesyes86.696yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes87.504no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno96.75no
125438motile2+flagellatedAbility to perform flagellated movementno89no
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes93.3
125439BacteriaNetmotilityAbility to perform movementno90.5
125439BacteriaNetgram_stainReaction to gram-stainingpositive99.8
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe98.7

External links

@ref: 64722

culture collection no.: NBRC 103185, KCTC 19278, DSM 108658, JCM 16223

straininfo link

  • @ref: 91895
  • straininfo: 402557

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18599696Streptacidiphilus anmyonensis sp. nov., Streptacidiphilus rugosus sp. nov. and Streptacidiphilus melanogenes sp. nov., acidophilic actinobacteria isolated from Pinus soils.Cho SH, Han JH, Ko HY, Kim SBInt J Syst Evol Microbiol10.1099/ijs.0.65480-02008Actinobacteria/*classification/genetics/growth & development/isolation & purification, Molecular Sequence Data, Phenotype, Phylogeny, *Pinus, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, *Soil Microbiology, Species SpecificityGenetics
Phylogeny29620496Streptacidiphilus monticola sp. nov., a novel actinomycete isolated from soil.Song W, Duan L, Jin L, Zhao J, Jiang S, Sun T, Guo XW, Xiang W, Wang XInt J Syst Evol Microbiol10.1099/ijsem.0.0027512018Actinobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny30102143Streptacidiphilus pinicola sp. nov., isolated from pine grove soil.Roh SG, Kim MK, Park S, Yun BR, Park J, Kim MJ, Kim YS, Kim SBInt J Syst Evol Microbiol10.1099/ijsem.0.0029572018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Nucleic Acid Hybridization, *Phylogeny, Pinus/*microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Streptomycetaceae/*classification/genetics/isolation & purificationTranscriptome
Phylogeny34106822Streptacidiphilus fuscans sp. nov., a novel actinobacterium isolated from the root of pumpkin (Cucurbita moschata).Yu B, Han C, Zhao J, Zhang Y, Shan Q, Wu Y, Ju H, Xiang W, Wang XInt J Syst Evol Microbiol10.1099/ijsem.0.0048242021Actinobacteria/genetics/growth & development/*isolation & purification/ultrastructure, Base Sequence, Cucurbita/*microbiology, DNA, Bacterial/genetics, Genome, Bacterial, Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species SpecificityGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32427Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172865028776041
64722Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-108658Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108658)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91895Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402557.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG