Strain identifier

BacDive ID: 134319

Type strain: Yes

Species: Chryseobacterium aquifrigidense

Strain Designation: CW9

Strain history: CIP <- 2012, JCM <- 2007, C.N. Seong, Nat. Univ. Suncheon, Korea: strain CW9

NCBI tax ID(s): 558021 (species)

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General

@ref: 32423

BacDive-ID: 134319

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Chryseobacterium aquifrigidense CW9 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Water-cooling system in Gwangyang.

NCBI tax id

  • NCBI tax id: 558021
  • Matching level: species

strain history

@refhistory
67770C. N. Seong CW9.
67771<- CN Seong, Sunchon Natl. Univ.
116450CIP <- 2012, JCM <- 2007, C.N. Seong, Nat. Univ. Suncheon, Korea: strain CW9

doi: 10.13145/bacdive134319.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium aquifrigidense
  • full scientific name: Chryseobacterium aquifrigidense Park et al. 2008

@ref: 32423

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Chryseobacterium

species: Chryseobacterium aquifrigidense

strain designation: CW9

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
32423negative1.75 µm0.75 µmrod-shapedno
67771rod-shapedno
67771negative
116450negativerod-shapedno

pigmentation

  • @ref: 32423
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34331MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116450CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
32423positivegrowth15-37
32423positiveoptimum25mesophilic
34331positivegrowth30mesophilic
67770positivegrowth30mesophilic
67771positivegrowth25mesophilic

culture pH

@refabilitytypepHPH range
32423positivegrowth06-09alkaliphile
32423positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
32423aerobe
67771aerobe

halophily

  • @ref: 32423
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3242317234glucose+carbon source
3242317306maltose+carbon source
324234853esculin+hydrolysis

enzymes

@refvalueactivityec
32423acid phosphatase+3.1.3.2
32423alkaline phosphatase+3.1.3.1
32423catalase+1.11.1.6
32423gelatinase+
32423cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
67770Water-cooling system in GwangyangRepublic of KoreaKORAsia
67771From water-cooling system(cooled water from an oxygen-producing plant)Republic of KoreaKORAsiaGwangyang
116450Environment, Water-cooling systemRepublic of KoreaKORAsiaGwangyang bay

Safety information

risk assessment

  • @ref: 116450
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 32423
  • description: Chryseobacterium aquifrigidense strain CW9 16S ribosomal RNA gene, partial sequence
  • accession: EF644913
  • length: 1431
  • database: nuccore
  • NCBI tax ID: 558021

GC content

@refGC-contentmethod
3242335.6
6777035.6thermal denaturation, midpoint method (Tm)

External links

@ref: 32423

culture collection no.: KCTC 12894, JCM 14756, CIP 110377

straininfo link

  • @ref: 91894
  • straininfo: 343443

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18319464Chryseobacterium aquifrigidense sp. nov., isolated from a water-cooling system.Park SC, Kim MS, Baik KS, Kim EM, Rhee MS, Seong CNInt J Syst Evol Microbiol10.1099/ijs.0.65475-02008Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Fresh Water/*microbiology, Genes, rRNA, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, *Refrigeration, Sequence Analysis, DNA, Species SpecificityGenetics
Phylogeny19749032Chryseobacterium arthrosphaerae sp. nov., isolated from the faeces of the pill millipede Arthrosphaera magna Attems.Kampfer P, Arun AB, Young CC, Chen WM, Sridhar KR, Rekha PDInt J Syst Evol Microbiol10.1099/ijs.0.016840-02009Animals, Arthropods/*microbiology, Chryseobacterium/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Feces/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/geneticsMetabolism
Phylogeny21571927Chryseobacterium vietnamense sp. nov., isolated from forest soil.Li Z, Zhu HInt J Syst Evol Microbiol10.1099/ijs.0.027201-02011Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, Polyenes/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Trees/*microbiology, Vietnam, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32423Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172864628776041
34331Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8229
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
91894Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID343443.1
116450Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110377Collection of Institut Pasteur (CIP 110377)