Strain identifier
BacDive ID: 134307
Type strain: 
Species: Geotalea uraniireducens
Strain Designation: Rf4
NCBI tax ID(s): 351604 (species)
version 8.1 (current version)
General
@ref: 32361
BacDive-ID: 134307
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative, motile, rod-shaped
description: Geotalea uraniireducens Rf4 is a Gram-negative, motile, rod-shaped bacterium that was isolated from Subsurface sediment undergoing uranium bioremediation.
NCBI tax id
- NCBI tax id: 351604
- Matching level: species
doi: 10.13145/bacdive134307.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfuromonadales
- family: Geobacteraceae
- genus: Geotalea
- species: Geotalea uraniireducens
- full scientific name: Geotalea uraniireducens (Shelobolina et al. 2008) Waite et al. 2020
synonyms
- @ref: 20215
- synonym: Geobacter uraniireducens
@ref: 32361
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfuromonadales
family: Geobacteraceae
genus: Geobacter
species: Geobacter uraniireducens
strain designation: Rf4
type strain: yes
Morphology
cell morphology
- @ref: 32361
- gram stain: negative
- cell length: 1.6 µm
- cell width: 0.55 µm
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 32361 | positive | growth | 10-34 | |
| 32361 | positive | optimum | 32 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 32361 | positive | growth | 6-7.7 |
| 32361 | positive | optimum | 6.75 |
Isolation, sampling and environmental information
isolation
- @ref: 32361
- sample type: Subsurface sediment undergoing uranium bioremediation
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Bioremediation | |
| #Environmental | #Terrestrial | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_859.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15357;96_514;97_592;98_680;99_859&stattab=map
- Last taxonomy: Geobacter uraniireducens
- 16S sequence: EF527427
- Sequence Identity:
- Total samples: 807
- soil counts: 362
- aquatic counts: 211
- animal counts: 186
- plant counts: 48
Sequence information
16S sequences
- @ref: 32361
- description: Geobacter uraniireducens Rf4 16S ribosomal RNA gene, partial sequence
- accession: EF527427
- length: 1359
- database: nuccore
- NCBI tax ID: 351605
Genome sequences
- @ref: 66792
- description: Geotalea uraniireducens Rf4
- accession: GCA_000016745
- assembly level: complete
- database: ncbi
- NCBI tax ID: 351605
GC content
- @ref: 32361
- GC-content: 54
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 88.346 | yes |
| flagellated | no | 74.97 | no |
| gram-positive | no | 98.921 | no |
| anaerobic | yes | 95.744 | no |
| halophile | no | 92.266 | no |
| spore-forming | no | 84.33 | no |
| thermophile | no | 92.093 | yes |
| glucose-util | no | 56.039 | no |
| aerobic | no | 94.528 | no |
| glucose-ferment | no | 87.033 | no |
External links
@ref: 32361
culture collection no.: ATCC BAA 1134, JCM 13001
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 32361 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28590 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |