Strain identifier
BacDive ID: 134303
Type strain: 
Species: Methylomicrobium japanense
Strain Designation: NI
NCBI tax ID(s): 81932 (species)
version 8.1 (current version)
General
@ref: 32326
BacDive-ID: 134303
keywords: Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Methylomicrobium japanense NI is an aerobe, Gram-negative, motile bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 81932
- Matching level: species
doi: 10.13145/bacdive134303.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Methylococcales
- family: Methylococcaceae
- genus: Methylomicrobium
- species: Methylomicrobium japanense
- full scientific name: Methylomicrobium japanense Kalyuzhnaya et al. 2008
synonyms
- @ref: 20215
- synonym: Methylotuvimicrobium japanense
@ref: 32326
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Methylococcales
family: Methylococcaceae
genus: Methylomicrobium
species: Methylomicrobium japanense
strain designation: NI
type strain: yes
Morphology
cell morphology
- @ref: 32326
- gram stain: negative
- cell length: 2.3 µm
- cell width: 1.05 µm
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture temp
- @ref: 32326
- growth: positive
- type: growth
- temperature: 15-37
culture pH
- @ref: 32326
- ability: positive
- type: optimum
- pH: 8.1
Physiology and metabolism
oxygen tolerance
- @ref: 32326
- oxygen tolerance: aerobe
spore formation
- @ref: 32326
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 32326 | NaCl | positive | growth | 0.174-8.7 % |
| 32326 | NaCl | positive | optimum | 3.48 % |
Isolation, sampling and environmental information
isolation
- @ref: 32326
- sample type: marine sediment
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
Sequence information
GC content
- @ref: 32326
- GC-content: 49.9
External links
@ref: 32326
culture collection no.: VKM B-2462, FERM BP-5633, NBRC 103677
literature
- topic: Phylogeny
- Pubmed-ID: 18319461
- title: Classification of halo(alkali)philic and halo(alkali)tolerant methanotrophs provisionally assigned to the genera Methylomicrobium and Methylobacter and emended description of the genus Methylomicrobium.
- authors: Kalyuzhnaya MG, Khmelenina V, Eshinimaev B, Sorokin D, Fuse H, Lidstrom M, Trotsenko Y
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65317-0
- year: 2008
- mesh: DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Hydrogen-Ion Concentration, Methane/metabolism, Methylococcaceae/*classification/genetics/growth & development/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, Species Specificity
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 32326 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28560 | 28776041 |