Strain identifier
BacDive ID: 134300
Type strain: 
Species: Sinomonas echigonensis
Strain Designation: LC10
Strain history: CCTCC AB 206017 <-- L. Ding and A. Yokota; IAM, Japan; LC10.
NCBI tax ID(s): 369940 (species)
version 8.1 (current version)
General
@ref: 32315
BacDive-ID: 134300
keywords: 16S sequence, Bacteria, aerobe, Gram-positive, rod-shaped
description: Sinomonas echigonensis LC10 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from volcanic rock.
NCBI tax id
- NCBI tax id: 369940
- Matching level: species
strain history
- @ref: 67770
- history: CCTCC AB 206017 <-- L. Ding and A. Yokota; IAM, Japan; LC10.
doi: 10.13145/bacdive134300.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Sinomonas
- species: Sinomonas echigonensis
- full scientific name: Sinomonas echigonensis (Ding et al. 2009) Zhou et al. 2012
synonyms
- @ref: 20215
- synonym: Arthrobacter echigonensis
@ref: 32315
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Micrococcaceae
genus: Sinomonas
species: Sinomonas echigonensis
strain designation: LC10
type strain: yes
Morphology
cell morphology
- @ref: 32315
- gram stain: positive
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 32315
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 32315 | positive | growth | 10-40 | |
| 32315 | positive | optimum | 30 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32315 | positive | growth | 06-10 | alkaliphile |
| 32315 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 32315
- oxygen tolerance: aerobe
spore formation
- @ref: 32315
- spore formation: no
halophily
- @ref: 32315
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 03-05 %
observation
- @ref: 67770
- observation: quinones: MK-9(H2), MK-10(H2)
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32315 | 17234 | glucose | + | carbon source |
| 32315 | 17306 | maltose | + | carbon source |
| 32315 | 33942 | ribose | + | carbon source |
| 32315 | 17992 | sucrose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 32315 | acid phosphatase | + | 3.1.3.2 |
| 32315 | alkaline phosphatase | + | 3.1.3.1 |
| 32315 | catalase | + | 1.11.1.6 |
| 32315 | pyrazinamidase | + | 3.5.1.B15 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 32315 | volcanic rock | |||
| 67770 | Filtration substrate made from volcanic rock from Niigata | Japan | JPN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Volcanic
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 32315 | Arthrobacter echigonensis gene for 16S rRNA, partial sequence | AB248531 | 1495 | nuccore | 369940 |
| 67770 | Sinomonas echigonensis JCM 30148 gene for 16S ribosomal RNA, partial sequence | LC438758 | 1393 | ena | 369940 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 32315 | 71.8 | |
| 67770 | 71.8 | high performance liquid chromatography (HPLC) |
External links
@ref: 32315
culture collection no.: IAM 15385, CCTCC AB 206017, JCM 30148, DSM 107965, JCM 21829
straininfo link
- @ref: 91882
- straininfo: 402299
literature
- topic: Phylogeny
- Pubmed-ID: 19329620
- title: Four novel Arthrobacter species isolated from filtration substrate.
- authors: Ding L, Hirose T, Yokota A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65301-0
- year: 2009
- mesh: Amino Acids/analysis, Arthrobacter/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, *Soil Microbiology, Temperature, Vitamin K 2/analysis
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 32315 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28552 | 28776041 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 91882 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402299.1 |