Strain identifier
BacDive ID: 134296
Type strain: 
Species: Marinobacter guineae
Strain Designation: M3B
NCBI tax ID(s): 432303 (species)
version 8.1 (current version)
General
@ref: 32313
BacDive-ID: 134296
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Marinobacter guineae M3B is an aerobe, Gram-negative, motile bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 432303
- Matching level: species
doi: 10.13145/bacdive134296.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Marinobacter
- species: Marinobacter guineae
- full scientific name: Marinobacter guineae Montes et al. 2008
@ref: 32313
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Marinobacter
species: Marinobacter guineae
strain designation: M3B
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 32313 | negative | 2.7 µm | 0.4 µm | rod-shaped | yes | |
| 69480 | yes | 96.289 | ||||
| 69480 | negative | 99.999 |
Culture and growth conditions
culture temp
- @ref: 32313
- growth: positive
- type: growth
- temperature: 04-42
culture pH
- @ref: 32313
- ability: positive
- type: growth
- pH: 5-9.5
- PH range: alkaliphile
Physiology and metabolism
oxygen tolerance
- @ref: 32313
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 32313 | no | |
| 69481 | no | 100 |
| 69480 | no | 99.999 |
halophily
- @ref: 32313
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 01-15 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32313 | 506227 | N-acetylglucosamine | + | carbon source |
| 32313 | 18401 | phenylacetate | + | carbon source |
| 32313 | 4853 | esculin | + | hydrolysis |
| 32313 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 32313 | acid phosphatase | + | 3.1.3.2 |
| 32313 | alkaline phosphatase | + | 3.1.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 32313
- sample type: marine sediment
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_72049.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_1317;97_1564;98_5513;99_72049&stattab=map
- Last taxonomy: Marinobacter guineae
- 16S sequence: AM503093
- Sequence Identity:
- Total samples: 50
- soil counts: 5
- aquatic counts: 38
- animal counts: 6
- plant counts: 1
Sequence information
16S sequences
- @ref: 32313
- description: Marinobacter guineae 16S rRNA gene, strain LMG 24048
- accession: AM503093
- length: 1488
- database: nuccore
- NCBI tax ID: 432303
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Marinobacter guineae M3B | GCA_002744735 | scaffold | ncbi | 432303 |
| 66792 | Marinobacter guineae strain M3B | 432303.3 | wgs | patric | 432303 |
| 66792 | Marinobacter guineae M3B | 2834661177 | draft | img | 432303 |
GC content
- @ref: 32313
- GC-content: 57.1
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | yes | 87.215 | no |
| gram-positive | no | 98.722 | yes |
| anaerobic | no | 97.771 | yes |
| aerobic | yes | 86.987 | yes |
| halophile | yes | 90.939 | no |
| spore-forming | no | 96.44 | yes |
| glucose-util | yes | 55.382 | no |
| motile | yes | 91.049 | yes |
| glucose-ferment | no | 89.968 | no |
| thermophile | no | 99.408 | no |
External links
@ref: 32313
culture collection no.: LMG 24048, CECT 7243
straininfo link
- @ref: 91878
- straininfo: 354314
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 18523176 | Marinobacter guineae sp. nov., a novel moderately halophilic bacterium from an Antarctic environment. | Montes MJ, Bozal N, Mercade E | Int J Syst Evol Microbiol | 10.1099/ijs.0.65298-0 | 2008 | Antarctic Regions, Bacterial Typing Techniques, Base Composition, Base Sequence, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Geologic Sediments/*microbiology, Marinobacter/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/chemistry/genetics, Sequence Analysis, DNA, *Sodium Chloride, Species Specificity | Genetics |
| Phylogeny | 26518711 | Marinobacter aromaticivorans sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from sea sediment. | Cui Z, Gao W, Xu G, Luan X, Li Q, Yin X, Huang D, Zheng L | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000722 | 2015 | Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/microbiology, Marinobacter/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Polycyclic Aromatic Hydrocarbons/*metabolism, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 32313 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28550 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | ||
| 91878 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID354314.1 |