Strain identifier

BacDive ID: 134294

Type strain: Yes

Species: Chryseobacterium marinum

Strain history: CIP <- 2012, NBRC <- T.H. Choi, Inha Univ.: strain IMCC3228

NCBI tax ID(s): 442733 (species)

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General

@ref: 32299

BacDive-ID: 134294

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Chryseobacterium marinum KCCM 42689 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 442733
  • Matching level: species

strain history

  • @ref: 120809
  • history: CIP <- 2012, NBRC <- T.H. Choi, Inha Univ.: strain IMCC3228

doi: 10.13145/bacdive134294.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium marinum
  • full scientific name: Chryseobacterium marinum (Lee et al. 2007) Kämpfer et al. 2009

  • synonyms

    @refsynonym
    20215Halpernia marina
    20215Sejongia marina

@ref: 32299

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Chryseobacterium

species: Chryseobacterium marinum

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
32299negative0.9 µm0.65 µmrod-shapedno
120809negativerod-shapedno

pigmentation

  • @ref: 32299
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlink
120809CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13
120809CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
32299positivegrowth03-25
32299positiveoptimum15psychrophilic

culture pH

@refabilitytypepHPH range
32299positivegrowth06-10alkaliphile
32299positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 32299
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
32299NaClpositivegrowth0-3.5 %
32299NaClpositiveoptimum0.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3229921217L-alaninamide+carbon source
3229916449alanine+carbon source
3229940585alpha-cyclodextrin+carbon source
32299286442-oxopentanoate+carbon source
3229922653asparagine+carbon source
3229935391aspartate+carbon source
3229923652dextrin+carbon source
3229929987glutamate+carbon source
3229925017leucine+carbon source
3229917306maltose+carbon source
3229926271proline+carbon source
3229917822serine+carbon source
3229930031succinate+carbon source
3229926986threonine+carbon source
3229953423tween 40+carbon source
3229953426tween 80+carbon source
322994853esculin+hydrolysis

enzymes

@refvalueactivityec
32299acid phosphatase+3.1.3.2
32299alkaline phosphatase+3.1.3.1
32299catalase+1.11.1.6
32299gelatinase+
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120809--------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
32299marine sediment
120809Environment, SeawaterMaxwell bay, King George IslandAntarcticaATAAntarctica

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_84155.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_76;96_19049;97_23613;98_58371;99_84155&stattab=map
  • Last taxonomy: Chryseobacterium marinum
  • 16S sequence: EF554366
  • Sequence Identity:
  • Total samples: 74
  • soil counts: 23
  • aquatic counts: 26
  • animal counts: 24
  • plant counts: 1

Safety information

risk assessment

  • @ref: 120809
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 32299
  • description: Chryseobacterium marinum strain IMCC3228 16S ribosomal RNA gene, partial sequence
  • accession: EF554366
  • length: 1471
  • database: nuccore
  • NCBI tax ID: 442733

GC content

  • @ref: 32299
  • GC-content: 35

External links

@ref: 32299

culture collection no.: KCCM 42689, NBRC 103143, IMCC 3228, CIP 110389

straininfo link

  • @ref: 91876
  • straininfo: 323269

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18048749Sejongia marina sp. nov., isolated from Antarctic seawater.Lee K, Lee HK, Choi TH, Cho JCInt J Syst Evol Microbiol10.1099/ijs.0.65279-02007Aerobiosis, Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/chemistry/*classification/genetics/*isolation & purification, Genes, rRNA, Locomotion, Molecular Sequence Data, Oxidoreductases/analysis, Phylogeny, Pigments, Biological/metabolism, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, TemperatureEnzymology
Phylogeny19620362Transfer of Sejongia antarctica, Sejongia jeonii and Sejongia marina to the genus Chryseobacterium as Chryseobacterium antarcticum comb. nov., Chryseobacterium jeonii comb. nov. and Chryseobacterium marinum comb. nov.Kampfer P, Lodders N, Vaneechoutte M, Wauters GInt J Syst Evol Microbiol10.1099/ijs.0.009142-02009Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Flavobacteriaceae/*classification/*genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32299Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172853828776041
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91876Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID323269.1
120809Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110389Collection of Institut Pasteur (CIP 110389)