Strain identifier

BacDive ID: 134282

Type strain: Yes

Species: Marinobacter salicampi

Strain Designation: ISL-40

Strain history: CIP <- 2007, CCUG <- J.H. Yoon, KRIBB, Taejon, Korea: strain ISL-40

NCBI tax ID(s): 435907 (species)

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General

@ref: 32252

BacDive-ID: 134282

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Marinobacter salicampi ISL-40 is an aerobe, Gram-negative, motile bacterium that was isolated from Marine solar saltern.

NCBI tax id

  • NCBI tax id: 435907
  • Matching level: species

strain history

@refhistory
67771<- JH Yoon, KRIBB
122373CIP <- 2007, CCUG <- J.H. Yoon, KRIBB, Taejon, Korea: strain ISL-40

doi: 10.13145/bacdive134282.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Marinobacter
  • species: Marinobacter salicampi
  • full scientific name: Marinobacter salicampi Yoon et al. 2007

@ref: 32252

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Marinobacter

species: Marinobacter salicampi

strain designation: ISL-40

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
32252negative4 µm0.6 µmrod-shapedyes
67771negative
122373negativerod-shapedyes

colony morphology

  • @ref: 60148
  • incubation period: 7 days

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33320Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
122373CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
32252positivegrowth04-39
32252positiveoptimum30mesophilic
33320positivegrowth30mesophilic
60148positivegrowth30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepH
32252positivegrowth5.5-8
32252positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
32252aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
32252NaClpositivegrowth0-16 %
32252NaClpositiveoptimum8 %
60148NaClpositivegrowth6 %

observation

  • @ref: 32252
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3225230089acetate+carbon source
3225225115malate+carbon source
3225215361pyruvate+carbon source
3225230031succinate+carbon source
3225217632nitrate+reduction
12237317632nitrate+reduction
12237316301nitrite-reduction

metabolite production

  • @ref: 122373
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
32252alkaline phosphatase+3.1.3.1
32252catalase+1.11.1.6
32252cytochrome oxidase+1.9.3.1
122373oxidase+
122373catalase+1.11.1.6
122373urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122373-+++-+++--++-----+--

Isolation, sampling and environmental information

isolation

@refsample typesampling datecountryorigin.countrycontinentgeographic locationisolation date
60148Marine solar saltern2005Republic of KoreaKORAsia
67771From saltern fieldRepublic of KoreaKORAsiathe Yellow Sea
122373Environment, Marine solar salternRepublic of KoreaKORAsiaTaejon2005

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Condition#Saline
#Engineered#Industrial#Industrial production
#Environmental#Terrestrial#Coast

taxonmaps

  • @ref: 69479
  • File name: preview.99_90240.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_4459;97_47486;98_62254;99_90240&stattab=map
  • Last taxonomy: Marinobacter salicampi subclade
  • 16S sequence: EF486354
  • Sequence Identity:
  • Total samples: 64
  • soil counts: 5
  • aquatic counts: 55
  • animal counts: 4

Safety information

risk assessment

  • @ref: 122373
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 32252
  • description: Marinobacter salicampi strain ISL-40 16S ribosomal RNA gene, partial sequence
  • accession: EF486354
  • length: 1496
  • database: nuccore
  • NCBI tax ID: 435907

Genome sequences

  • @ref: 66792
  • description: Marinobacter salicampi ISL-40
  • accession: GCA_011074795
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 435907

GC content

  • @ref: 32252
  • GC-content: 58.1

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes85.145yes
flagellatedyes77.449no
gram-positiveno98.585no
anaerobicno97.638yes
aerobicyes88.881yes
halophileyes88.605yes
spore-formingno94.646no
thermophileno99.19yes
glucose-utilyes51.606no
glucose-fermentno88.746no

External links

@ref: 32252

culture collection no.: KCTC 129725, CCUG 54357, KCTC 12972, CIP 109719

straininfo link

  • @ref: 91868
  • straininfo: 309544

literature

  • topic: Phylogeny
  • Pubmed-ID: 17766879
  • title: Marinobacter salicampi sp. nov., isolated from a marine solar saltern in Korea.
  • authors: Yoon JH, Lee MH, Kang SJ, Oh TK
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65197-0
  • year: 2007
  • mesh: Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism/physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Hydrogen-Ion Concentration, Korea, Locomotion/physiology, Marinobacter/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Temperature, Ubiquinone/analysis
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32252Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172849328776041
33320Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7494
60148Curators of the CCUGhttps://www.ccug.se/strain?id=54357Culture Collection University of Gothenburg (CCUG) (CCUG 54357)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91868Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID309544.1
122373Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109719Collection of Institut Pasteur (CIP 109719)