Strain identifier
BacDive ID: 134281
Type strain: 
Species: Evansella polygoni
Strain Designation: YN-1
Strain history: I. Yumoto YN-1.
NCBI tax ID(s): 79879 (species)
version 9 (current version)
General
@ref: 32251
BacDive-ID: 134281
keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, rod-shaped
description: Evansella polygoni YN-1 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from Indigo balls.
NCBI tax id
- NCBI tax id: 79879
- Matching level: species
strain history
- @ref: 67770
- history: I. Yumoto YN-1.
doi: 10.13145/bacdive134281.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Evansella
- species: Evansella polygoni
- full scientific name: Evansella polygoni (Aino et al. 2008) Gupta et al. 2020
synonyms
- @ref: 20215
- synonym: Bacillus polygoni
@ref: 32251
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Bacillus
species: Bacillus polygoni
strain designation: YN-1
type strain: yes
Morphology
cell morphology
- @ref: 32251
- gram stain: positive
- cell length: 2.25 µm
- cell width: 0.45 µm
- cell shape: rod-shaped
- motility: no
Culture and growth conditions
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 32251 | positive | growth | 05-47 |
| 32251 | positive | optimum | 30 |
| 67770 | positive | growth | 30 |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32251 | positive | growth | 08-12 | alkaliphile |
| 32251 | positive | optimum | 9 |
Physiology and metabolism
oxygen tolerance
- @ref: 32251
- oxygen tolerance: aerobe
spore formation
- @ref: 32251
- spore formation: yes
halophily
- @ref: 32251
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 03-14 %
observation
- @ref: 67770
- observation: quinones: MK-7
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32251 | 22599 | arabinose | + | carbon source |
| 32251 | 28757 | fructose | + | carbon source |
| 32251 | 17234 | glucose | + | carbon source |
| 32251 | 17754 | glycerol | + | carbon source |
| 32251 | 17306 | maltose | + | carbon source |
| 32251 | 29864 | mannitol | + | carbon source |
| 32251 | 37684 | mannose | + | carbon source |
| 32251 | 17268 | myo-inositol | + | carbon source |
| 32251 | 16634 | raffinose | + | carbon source |
| 32251 | 17992 | sucrose | + | carbon source |
| 32251 | 18222 | xylose | + | carbon source |
| 32251 | 17632 | nitrate | + | reduction |
enzymes
- @ref: 32251
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 32251 | Indigo balls | |||
| 67770 | Indigo balls obtained from Ibaraki Pref. | Japan | JPN | Asia |
isolation source categories
- Cat1: #Engineered
- Cat2: #Industrial
- Cat3: #Engineered product
taxonmaps
- @ref: 69479
- File name: preview.99_6198.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_2701;97_3317;98_4594;99_6198&stattab=map
- Last taxonomy: Bacillales
- 16S sequence: AB292819
- Sequence Identity:
- Total samples: 657
- soil counts: 122
- aquatic counts: 68
- animal counts: 416
- plant counts: 51
Sequence information
16S sequences
- @ref: 32251
- description: Evansella clarkii gene for 16S ribosomal RNA, partial sequence
- accession: AB292819
- length: 1558
- database: nuccore
- NCBI tax ID: 425933
GC content
| @ref | GC-content | method |
|---|---|---|
| 32251 | 42.9 | |
| 67770 | 42.9 | high performance liquid chromatography (HPLC) |
External links
@ref: 32251
culture collection no.: JCM 14604, NCIMB 14282, LMG 24733
straininfo link
- @ref: 91867
- straininfo: 323948
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 32251 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28492 | 28776041 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 91867 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID323948.1 |