Strain identifier

BacDive ID: 134276

Type strain: Yes

Species: Algibacter mikhailovii

Strain history: CIP <- 2007, KCTC <- O. I. Nedashkovskaya, Vladivostok, Russia: strain KMM 6171

NCBI tax ID(s): 425498 (species)

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General

@ref: 32229

BacDive-ID: 134276

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Algibacter mikhailovii KCTC 127105 is an aerobe, Gram-negative, motile bacterium that was isolated from Sea urchin, Strongylocentrotus intermedius.

NCBI tax id

  • NCBI tax id: 425498
  • Matching level: species

strain history

  • @ref: 120952
  • history: CIP <- 2007, KCTC <- O. I. Nedashkovskaya, Vladivostok, Russia: strain KMM 6171

doi: 10.13145/bacdive134276.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Algibacter
  • species: Algibacter mikhailovii
  • full scientific name: Algibacter mikhailovii Nedashkovskaya et al. 2007

@ref: 32229

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Algibacter

species: Algibacter mikhailovii

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangement
32229negative6 µm0.35 µmrod-shapedyesgliding
120952negativerod-shapedno

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
32832Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
120952CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
32229positivegrowth04-37
32229positiveoptimum24psychrophilic
32832positivegrowth25mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
32229aerobe
120952facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
32229NaClpositivegrowth01-06 %
32229NaClpositiveoptimum2.5 %

observation

  • @ref: 32229
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3222922599arabinose+carbon source
3222917234glucose+carbon source
3222917716lactose+carbon source
3222937684mannose+carbon source
3222930911sorbitol+carbon source
322294853esculin+hydrolysis
3222917632nitrate+reduction
12095217632nitrate+reduction
12095216301nitrite-reduction

metabolite production

  • @ref: 120952
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
32229acid phosphatase+3.1.3.2
32229alkaline phosphatase+3.1.3.1
32229catalase+1.11.1.6
32229gelatinase+
32229cytochrome oxidase+1.9.3.1
120952oxidase+
120952catalase+1.11.1.6
120952urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120952-++--++---++---+++--

Isolation, sampling and environmental information

isolation

  • @ref: 120952
  • sample type: Sea urchin, Strongylocentrotus intermedius
  • geographic location: Troitsa bay, Sea of Japan
  • country: Russian Federation
  • origin.country: RUS
  • continent: Europe

taxonmaps

  • @ref: 69479
  • File name: preview.99_40457.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_107;96_3202;97_23370;98_29520;99_40457&stattab=map
  • Last taxonomy: Algibacter mikhailovii subclade
  • 16S sequence: AM491809
  • Sequence Identity:
  • Total samples: 1311
  • soil counts: 13
  • aquatic counts: 1234
  • animal counts: 57
  • plant counts: 7

Safety information

risk assessment

  • @ref: 120952
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 32229
  • description: Algibacter mikhailovii partial 16S rRNA gene, type strain LMG 23988T
  • accession: AM491809
  • length: 1473
  • database: nuccore
  • NCBI tax ID: 425498

GC content

  • @ref: 32229
  • GC-content: 35.1

External links

@ref: 32229

culture collection no.: KCTC 127105, LMG 23988, KMM 6171T, CIP 109749, KCTC 12710, KMM 6171

straininfo link

  • @ref: 91862
  • straininfo: 264737

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17766889Algibacter mikhailovii sp. nov., a novel marine bacterium of the family Flavobacteriaceae, and emended description of the genus Algibacter.Nedashkovskaya OI, Vancanneyt M, Kim SB, Hoste B, Bae KSInt J Syst Evol Microbiol10.1099/ijs.0.65165-02007Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Genes, rRNA, Locomotion/physiology, Molecular Sequence Data, Organic Chemicals/metabolism, Phylogeny, Pigments, Biological/biosynthesis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Russia, Sea Urchins/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic AcidGenetics
Phylogeny22888187Marinivirga aestuarii gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from marine environments, and emended descriptions of the genera Hyunsoonleella, Jejuia and Pontirhabdus and the species Hyunsoonleella jejuensis, Jejuia pallidilutea and Pontirhabdus pectinivorans.Park SC, Choe HN, Hwang YM, Baik KS, Kim SN, Lee YS, Jung JS, Seong CNInt J Syst Evol Microbiol10.1099/ijs.0.042341-02012Animals, Bacterial Typing Techniques, Base Composition, Bivalvia/*microbiology, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32229Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172847128776041
32832Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7527
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91862Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID264737.1
120952Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109749Collection of Institut Pasteur (CIP 109749)