Strain identifier

BacDive ID: 134265

Type strain: Yes

Species: Roseomonas terrae

Strain Designation: DS-48

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 424799 (species)

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General

@ref: 32202

BacDive-ID: 134265

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, ovoid-shaped

description: Roseomonas terrae DS-48 is an aerobe, Gram-negative, ovoid-shaped bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 424799
  • Matching level: species

strain history

@refhistory
67770J.-H. Yoon DS-48.
67771<- JH Yoon, KRIBB

doi: 10.13145/bacdive134265.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Roseomonas
  • species: Roseomonas terrae
  • full scientific name: Roseomonas terrae Yoon et al. 2007

  • synonyms

    • @ref: 20215
    • synonym: Neoroseomonas terrae

@ref: 32202

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Acetobacteraceae

genus: Roseomonas

species: Roseomonas terrae

strain designation: DS-48

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
32202negative1.8 µm0.75 µmovoid-shapedno
67771negative

pigmentation

  • @ref: 32202
  • production: no

Culture and growth conditions

culture temp

@refgrowthtypetemperature
32202positivegrowth10-36
32202positiveoptimum25
67770positivegrowth25
67771positivegrowth25

culture pH

@refabilitytypepHPH range
32202positivegrowth5.5-10.5alkaliphile
32202positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
32202aerobe
67771aerobe

spore formation

  • @ref: 32202
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
32202NaClpositivegrowth0-1.0 %
32202NaClpositiveoptimum0.5 %

observation

@refobservation
67770quinones: Q-10
67771quinones: Q-10

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3220253424tween 20+carbon source
3220216199urea+carbon source

enzymes

@refvalueactivityec
32202acid phosphatase+3.1.3.2
32202alkaline phosphatase+3.1.3.1
32202catalase+1.11.1.6
32202cytochrome oxidase+1.9.3.1
32202urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
32202soil
67770Soil
67771From soilDokdoRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_39096.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_266;96_5468;97_6593;98_19411;99_39096&stattab=map
  • Last taxonomy: Roseomonas terrae
  • 16S sequence: EF363716
  • Sequence Identity:
  • Total samples: 584
  • soil counts: 411
  • aquatic counts: 96
  • animal counts: 44
  • plant counts: 33

Sequence information

16S sequences

  • @ref: 32202
  • description: Roseomonas terrae strain DS-48 16S ribosomal RNA gene, partial sequence
  • accession: EF363716
  • length: 1442
  • database: nuccore
  • NCBI tax ID: 424799

GC content

@refGC-contentmethod
6777069.3high performance liquid chromatography (HPLC)
6777169.3

External links

@ref: 32202

culture collection no.: KCTC 12874, JCM 14592

straininfo link

  • @ref: 91852
  • straininfo: 319389

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17978205Roseomonas terrae sp. nov.Yoon JH, Kang SJ, Oh HW, Oh TKInt J Syst Evol Microbiol10.1099/ijs.0.65113-02007Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Korea, Methylobacteriaceae/*classification/genetics/isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species SpecificityGenetics
Phylogeny24287870Roseomonas sediminicola sp. nov., isolated from fresh water.He D, Kim JK, Jiang XY, Park HY, Sun C, Yu HS, Yoon MH, Kim SC, Jin FX, Im WTAntonie Van Leeuwenhoek10.1007/s10482-013-0065-42013DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Fresh Water/*microbiology, Methylobacteriaceae/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/geneticsMetabolism
Phylogeny24363292Roseomonas soli sp. nov., isolated from an agricultural soil cultivated with Chinese cabbage (Brassica campestris).Kim DU, Ka JOInt J Syst Evol Microbiol10.1099/ijs.0.053827-02013Agriculture, Bacterial Typing Techniques, Base Composition, Brassica/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Methylobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryGenetics
Phylogeny24590559Roseomonas alkaliterrae sp. nov., isolated from an alkali geothermal soil sample in Tengchong, Yunnan, South-West China.Dong L, Ming H, Yin YR, Duan YY, Zhou EM, Nie GX, Feng HG, Liu L, Li WJAntonie Van Leeuwenhoek10.1007/s10482-014-0144-12014Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hot Springs, Methylobacteriaceae/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil MicrobiologyGenetics
Phylogeny26443678Roseomonas oryzicola sp. nov., isolated from the rhizosphere of rice (Oryza sativa L.).Chung EJ, Yoon HS, Kim KH, Jeon CO, Chung YRInt J Syst Evol Microbiol10.1099/ijsem.0.0006562015Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Methylobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Oryza/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryGenetics
Phylogeny26530339Roseomonas eburnea sp. nov., isolated from activated sludge.Wang C, Deng S, Liu X, Yao L, Shi C, Jiang J, Kwon SW, He J, Li JInt J Syst Evol Microbiol10.1099/ijsem.0.0007282015Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Methylobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Ubiquinone/analogs & derivatives/chemistry, Waste Water/microbiologyGenetics
Phylogeny26702622Roseomonas arctica sp. nov., isolated from arctic glacial foreland soil.Qiu X, Qu Z, Jiang F, Lin Y, Zhang Y, Chang X, Da X, Deng S, Kim M, Fang C, Peng FInt J Syst Evol Microbiol10.1099/ijsem.0.0008572015
Phylogeny35171088Roseomonas rubea sp. nov., isolated from rice paddy soil.Lee HJ, Whang KSInt J Syst Evol Microbiol10.1099/ijsem.0.0052512022Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Methylobacteriaceae/classification/isolation & purification, *Oryza, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32202Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172844428776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91852Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID319389.1