Strain identifier

BacDive ID: 134230

Type strain: Yes

Species: Alteromonas simiduii

Strain history: W. Y. Shieh AS1.

NCBI tax ID(s): 398036 (species)

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General

@ref: 31985

BacDive-ID: 134230

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Alteromonas simiduii BCRC 17572 is an aerobe, Gram-negative, motile bacterium that was isolated from estuarine water.

NCBI tax id

  • NCBI tax id: 398036
  • Matching level: species

strain history

  • @ref: 67770
  • history: W. Y. Shieh AS1.

doi: 10.13145/bacdive134230.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Alteromonas
  • species: Alteromonas simiduii
  • full scientific name: Alteromonas simiduii Chiu et al. 2007

@ref: 31985

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Alteromonas

species: Alteromonas simiduii

type strain: yes

Morphology

cell morphology

  • @ref: 31985
  • gram stain: negative
  • cell length: 1.2-2.5 µm
  • cell width: 0.4-0.8 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 31985
  • production: no

Culture and growth conditions

culture temp

@refgrowthtypetemperature
31985positivegrowth15-40
31985positiveoptimum30
67770positivegrowth30

culture pH

@refabilitytypepHPH range
31985positivegrowth06-09alkaliphile
31985positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 31985
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31985
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31985NaClpositivegrowth0.5-13 %
31985NaClpositiveoptimum6.75 %

observation

  • @ref: 67770
  • observation: quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
31985370543-hydroxybutyrate+carbon source
3198530089acetate+carbon source
3198516449alanine+carbon source
3198517057cellobiose+carbon source
3198528757fructose+carbon source
3198528260galactose+carbon source
3198517234glucose+carbon source
3198529987glutamate+carbon source
3198517754glycerol+carbon source
3198524996lactate+carbon source
3198517716lactose+carbon source
3198528053melibiose+carbon source
3198533942ribose+carbon source
3198517992sucrose+carbon source
3198526986threonine+carbon source
3198527082trehalose+carbon source
3198517632nitrate+reduction

enzymes

@refvalueactivityec
31985catalase+1.11.1.6
31985cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
31985estuarine water
67770Water sample collected at the estuary of the Er-Jen RiverTainanTaiwan, Province of ChinaTWNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Brackish
#Environmental#Aquatic#Estuary

taxonmaps

  • @ref: 69479
  • File name: preview.99_508.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_98;96_261;97_285;98_318;99_508&stattab=map
  • Last taxonomy: Alteromonas
  • 16S sequence: DQ836766
  • Sequence Identity:
  • Total samples: 5812
  • soil counts: 47
  • aquatic counts: 5573
  • animal counts: 164
  • plant counts: 28

Sequence information

16S sequences

  • @ref: 31985
  • description: Alteromonas simiduii strain BCRC 17572 16S ribosomal RNA gene, partial sequence
  • accession: DQ836766
  • length: 1395
  • database: nuccore
  • NCBI tax ID: 398036

GC content

@refGC-contentmethod
3198545.3
6777045.3high performance liquid chromatography (HPLC)

External links

@ref: 31985

culture collection no.: BCRC 17572, JCM 13896, AS 1

straininfo link

  • @ref: 91824
  • straininfo: 307509

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17551031Alteromonas tagae sp. nov. and Alteromonas simiduii sp. nov., mercury-resistant bacteria isolated from a Taiwanese estuary.Chiu HH, Shieh WY, Lin SY, Tseng CM, Chiang PW, Wagner-Dobler IInt J Syst Evol Microbiol10.1099/ijs.0.64762-02007Aerobiosis, Alteromonas/*classification/drug effects/*isolation & purification/physiology, Anti-Bacterial Agents/*metabolism/toxicity, Base Composition, Carbohydrate Metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Drug Resistance, Bacterial, Fermentation, Genes, rRNA/genetics, Gentian Violet, Hydrogen-Ion Concentration, Lipids/analysis, Locomotion, Mercury/*metabolism/toxicity, Molecular Sequence Data, Nitrates/metabolism, Oxidation-Reduction, Phenazines, Phylogeny, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Taiwan, TemperatureMetabolism
Phylogeny19390988Alteromonas halophila sp. nov., a new moderately halophilic bacterium isolated from a sea anemone.Chen YG, Xiao HD, Tang SK, Zhang YQ, Borrathybay E, Cui XL, Li WJ, Liu YQAntonie Van Leeuwenhoek10.1007/s10482-009-9341-82009Alteromonas/classification/genetics/*isolation & purification/metabolism, Animals, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sea Anemones/*microbiology, Seawater/*microbiology, Sodium Chloride/*metabolismMetabolism

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31985Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172823928776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91824Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID307509.1