Strain identifier

BacDive ID: 134227

Type strain: Yes

Species: Paraglaciecola agarilytica

Strain Designation: NO2

Strain history: <- SK Rhee, Chungbuk Natl. Univ.

NCBI tax ID(s): 395568 (species)

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General

@ref: 31963

BacDive-ID: 134227

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, ovoid-shaped

description: Paraglaciecola agarilytica NO2 is an aerobe, Gram-negative, motile bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 395568
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- SK Rhee, Chungbuk Natl. Univ.

doi: 10.13145/bacdive134227.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Paraglaciecola
  • species: Paraglaciecola agarilytica
  • full scientific name: Paraglaciecola agarilytica (Yong et al. 2007) Shivaji and Reddy 2014

  • synonyms

    • @ref: 20215
    • synonym: Glaciecola agarilytica

@ref: 31963

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Paraglaciecola

species: Paraglaciecola agarilytica

strain designation: NO2

type strain: yes

Morphology

cell morphology

@refgram staincell widthcell shapemotility
31963negative1.25 µmovoid-shapedyes
67771negative

pigmentation

  • @ref: 31963
  • production: no

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31963positivegrowth07-30
31963positiveoptimum33.5mesophilic
67771positivegrowth25mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31963aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
31963NaClpositivegrowth02-08 %
31963NaClpositiveoptimum5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3196330089acetate+carbon source
3196317057cellobiose+carbon source
3196323652dextrin+carbon source
3196328757fructose+carbon source
3196328260galactose+carbon source
3196325115malate+carbon source
3196337684mannose+carbon source
319634853esculin+hydrolysis

enzymes

@refvalueactivityec
31963catalase+1.11.1.6
31963cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
31963marine sediment
67771From sedimentRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_649.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_98;96_345;97_456;98_525;99_649&stattab=map
  • Last taxonomy: Paraglaciecola
  • 16S sequence: DQ784575
  • Sequence Identity:
  • Total samples: 15892
  • soil counts: 234
  • aquatic counts: 9023
  • animal counts: 6581
  • plant counts: 54

Sequence information

16S sequences

  • @ref: 31963
  • description: Glaciecola agarilytica strain NO2 16S ribosomal RNA gene, partial sequence
  • accession: DQ784575
  • length: 1463
  • database: nuccore
  • NCBI tax ID: 395568

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paraglaciecola agarilytica NO2GCA_000314935contigncbi1125747
66792Paraglaciecola agarilytica NO22529292809draftimg1125747

GC content

  • @ref: 31963
  • GC-content: 45

External links

@ref: 31963

culture collection no.: KCTC 12755, LMG 23762

straininfo link

  • @ref: 91821
  • straininfo: 292113

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17473239Glaciecola agarilytica sp. nov., an agar-digesting marine bacterium from the East Sea, Korea.Yong JJ, Park SJ, Kim HJ, Rhee SKInt J Syst Evol Microbiol10.1099/ijs.0.64723-02007Agar/metabolism, Alteromonadaceae/*classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, Base Composition, Carbon/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA/genetics, Geologic Sediments/*microbiology, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, TemperatureMetabolism
Phylogeny24981324Phylogenetic analyses of the genus Glaciecola: emended description of the genus Glaciecola, transfer of Glaciecola mesophila, G. agarilytica, G. aquimarina, G. arctica, G. chathamensis, G. polaris and G. psychrophila to the genus Paraglaciecola gen. nov. as Paraglaciecola mesophila comb. nov., P. agarilytica comb. nov., P. aquimarina comb. nov., P. arctica comb. nov., P. chathamensis comb. nov., P. polaris comb. nov. and P. psychrophila comb. nov., and description of Paraglaciecola oceanifecundans sp. nov., isolated from the Southern Ocean.Shivaji S, Reddy GSInt J Syst Evol Microbiol10.1099/ijs.0.065409-02014Alteromonadaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA Gyrase/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Oceans and Seas, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNAGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31963Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172821828776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91821Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID292113.1