Strain identifier
BacDive ID: 134199
Type strain:
Species: Myroides pelagicus
Strain Designation: SM1
Strain history: CIP <- 2006, IAM
NCBI tax ID(s): 270914 (species)
version 8.1 (current version)
General
@ref: 31808
BacDive-ID: 134199
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Myroides pelagicus SM1 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Seawater.
NCBI tax id
- NCBI tax id: 270914
- Matching level: species
strain history
@ref | history |
---|---|
33292 | 2006, IAM |
67770 | IAM 15337 <-- F. Kawai SM1. |
67771 | <- A Yokota, IAM <- F. Kawai, Okayama Univ. |
121650 | CIP <- 2006, IAM |
doi: 10.13145/bacdive134199.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Myroides
- species: Myroides pelagicus
- full scientific name: Myroides pelagicus Yoon et al. 2006
@ref: 31808
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Myroides
species: Myroides pelagicus
strain designation: SM1
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility |
---|---|---|---|---|---|
31808 | negative | 0.5-1 µm | 0.2-0.3 µm | rod-shaped | no |
67771 | rod-shaped | no | |||
67771 | negative | ||||
121650 | negative | rod-shaped | no |
pigmentation
- @ref: 31808
- production: yes
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
33292 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
121650 | CIP Medium 368 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=368 | |
121650 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
31808 | positive | growth | 10-37 | |
31808 | positive | optimum | 30-37 | mesophilic |
33292 | positive | growth | 30 | mesophilic |
60612 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 25 | mesophilic |
67771 | positive | growth | 28 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
31808 | positive | growth | 05-09 | alkaliphile |
31808 | positive | optimum | 07-08 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
31808 | aerobe |
60612 | aerobe |
67771 | aerobe |
121650 | obligate aerobe |
spore formation
- @ref: 31808
- spore formation: no
halophily
- @ref: 31808
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-9 %
observation
@ref | observation |
---|---|
31808 | aggregates in chains |
67770 | quinones: MK-6 |
67771 | quinones: MK-6 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31808 | 30089 | acetate | + | carbon source |
31808 | 16449 | alanine | + | carbon source |
31808 | 22653 | asparagine | + | carbon source |
31808 | 35391 | aspartate | + | carbon source |
31808 | 29987 | glutamate | + | carbon source |
31808 | 28087 | glycogen | + | carbon source |
31808 | 24996 | lactate | + | carbon source |
31808 | 25017 | leucine | + | carbon source |
31808 | 51850 | methyl pyruvate | + | carbon source |
31808 | 18257 | ornithine | + | carbon source |
31808 | 26271 | proline | + | carbon source |
31808 | 17822 | serine | + | carbon source |
31808 | 30031 | succinate | + | carbon source |
31808 | 26986 | threonine | + | carbon source |
31808 | 16704 | uridine | + | carbon source |
121650 | 17632 | nitrate | - | reduction |
121650 | 16301 | nitrite | + | reduction |
metabolite production
- @ref: 121650
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
31808 | alkaline phosphatase | + | 3.1.3.1 |
31808 | catalase | + | 1.11.1.6 |
31808 | gelatinase | + | |
31808 | cytochrome oxidase | + | 1.9.3.1 |
121650 | oxidase | + | |
121650 | catalase | + | 1.11.1.6 |
121650 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 60612 C15:0 0.5 15 60612 C16:0 0.4 16 60612 C13:0 iso 7.5 12.612 60612 C15:0 ANTEISO 0.7 14.711 60612 C15:0 ISO 57.7 14.621 60612 C15:0 ISO 3OH 4.2 16.135 60612 C16:0 3OH 0.9 17.52 60612 C16:0 iso 0.8 15.626 60612 C16:1 ω7c 0.9 15.819 60612 C17:0 iso 3OH 7.3 18.161 60612 C17:1 ω9c ISO 14.1 16.416 60612 C18:2 ω6,9c/C18:0 ANTE 0.4 17.724 60612 Unidentified 0.5 11.554 60612 Unidentified 0.4 12.944 60612 unknown 13.566 3.1 13.566 60612 unknown 16.580 0.8 16.58 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121650 | - | + | + | + | - | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | geographic location |
---|---|---|---|---|---|
60612 | Seawater | Thailand | THA | Asia | |
67770 | Seawater, off the coast of Thailand | Thailand | THA | Asia | |
67771 | From seawater | Thailand | THA | Asia | off the coast of Thiland |
121650 | Environment, Seawater | Thailand | THA | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_53994.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_195;96_674;97_30179;98_38602;99_53994&stattab=map
- Last taxonomy: Myroides pelagicus
- 16S sequence: AB176662
- Sequence Identity:
- Total samples: 615
- soil counts: 98
- aquatic counts: 148
- animal counts: 352
- plant counts: 17
Safety information
risk assessment
- @ref: 121650
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
- @ref: 31808
- description: Myroides pelagicus gene for 16S rRNA
- accession: AB176662
- length: 1486
- database: nuccore
- NCBI tax ID: 270914
GC content
@ref | GC-content | method |
---|---|---|
31808 | 33.6 | |
67771 | 33.6 | high performance liquid chromatography (HPLC) |
External links
@ref: 31808
culture collection no.: IAM 15337, KCTC 12661, CCUG 55494, CIP 109324, JCM 21782, NBRC 102469
straininfo link
- @ref: 91794
- straininfo: 297255
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 16902031 | Myroides pelagicus sp. nov., isolated from seawater in Thailand. | Yoon J, Maneerat S, Kawai F, Yokota A | Int J Syst Evol Microbiol | 10.1099/ijs.0.64336-0 | 2006 | Bacteroidetes/chemistry/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Oceans and Seas, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Thailand, Vitamin K 2/analogs & derivatives/analysis, *Water Microbiology | Genetics |
Phylogeny | 25515411 | Myroides injenensis sp. nov., a new member isolated from human urine. | Paek J, Shin JH, Shin Y, Park IS, Jin TE, Kook JK, Wie SH, Cho HG, Park SJ, Chang YH | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0317-y | 2014 | Bacterial Typing Techniques, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Flavobacteriaceae Infections/*microbiology, Humans, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Pigments, Biological/metabolism, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Urine/*microbiology | Pathogenicity |
Reference
@id | authors | title | doi/url | ID_cross_reference | pubmed | catalogue |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
31808 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28077 | 28776041 | |
33292 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/7053 | ||||
60612 | Curators of the CCUG | https://www.ccug.se/strain?id=55494 | Culture Collection University of Gothenburg (CCUG) (CCUG 55494) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
91794 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID297255.1 | |||
121650 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109324 | Collection of Institut Pasteur (CIP 109324) |