Strain identifier
BacDive ID: 134198
Type strain: 
Species: Tenacibaculum aestuarii
Strain Designation: SMK-4
Strain history: <- JH Yoon, KRIBB
NCBI tax ID(s): 362781 (species)
version 8.1 (current version)
General
@ref: 31796
BacDive-ID: 134198
DSM-Number: 113392
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Tenacibaculum aestuarii SMK-4 is an aerobe, Gram-negative, motile bacterium that was isolated from tidal flat sediment.
NCBI tax id
- NCBI tax id: 362781
- Matching level: species
strain history
| @ref | history |
|---|---|
| 67770 | J.-H. Yoon SMK-4. |
| 67771 | <- JH Yoon, KRIBB |
doi: 10.13145/bacdive134198.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Tenacibaculum
- species: Tenacibaculum aestuarii
- full scientific name: Tenacibaculum aestuarii Jung et al. 2006
@ref: 31796
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Tenacibaculum
species: Tenacibaculum aestuarii
full scientific name: Tenacibaculum aestuarii Jung et al. 2006
strain designation: SMK-4
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | flagellum arrangement |
|---|---|---|---|---|---|---|
| 31796 | negative | 2-3.5 µm | 0.3 µm | rod-shaped | yes | gliding |
| 67771 | rod-shaped | |||||
| 67771 | negative |
pigmentation
- @ref: 31796
- production: yes
Culture and growth conditions
culture medium
- @ref: 68880
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 31796 | positive | growth | 09-41 | |
| 31796 | positive | optimum | 30-37 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
| 67771 | positive | growth | 30 | mesophilic |
| 68880 | positive | growth | 28 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 31796 | positive | growth | 5.5-8.5 | alkaliphile |
| 31796 | positive | optimum | 7.5-8.5 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 31796 | aerobe |
| 67771 | aerobe |
spore formation
- @ref: 31796
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31796 | NaCl | positive | growth | 0-7 % |
| 31796 | NaCl | positive | optimum | 0-7 % |
observation
| @ref | observation |
|---|---|
| 31796 | aggregates in chains |
| 67770 | quinones: MK-6 |
| 67771 | quinones: MK-6 |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31796 | acid phosphatase | + | 3.1.3.2 |
| 31796 | alkaline phosphatase | + | 3.1.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 31796 | tidal flat sediment | ||||
| 67770 | Tidal flat sediment at Saemankum | Pyunsan | Republic of Korea | KOR | Asia |
| 67771 | From gaetbul | Republic of Korea | KOR | Asia | |
| 68880 | tidal flat sediment | Saemankum, Pyunsan | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Tidal flat |
| #Environmental | #Terrestrial | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_44438.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_214;96_2278;97_2761;98_5642;99_44438&stattab=map
- Last taxonomy: Tenacibaculum aestuarii
- 16S sequence: DQ314760
- Sequence Identity:
- Total samples: 281
- soil counts: 2
- aquatic counts: 265
- animal counts: 13
- plant counts: 1
Safety information
risk assessment
- @ref: 68880
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 31796
- description: Tenacibaculum aestuarii strain SMK-4 16S ribosomal RNA gene, partial sequence
- accession: DQ314760
- length: 1473
- database: nuccore
- NCBI tax ID: 362781
GC content
| @ref | GC-content | method |
|---|---|---|
| 31796 | 33.6 | |
| 67770 | 33.6 | high performance liquid chromatography (HPLC) |
External links
@ref: 31796
culture collection no.: KCTC 12569, JCM 13491, CIP 109328, DSM 113392, JCM 13941
straininfo link
- @ref: 91793
- straininfo: 297336
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 16825632 | Tenacibaculum aestuarii sp. nov., isolated from a tidal flat sediment in Korea. | Jung SY, Oh TK, Yoon JH | Int J Syst Evol Microbiol | 10.1099/ijs.0.64302-0 | 2006 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Flavobacteriaceae/*classification/cytology/*isolation & purification/physiology, Genes, rRNA, Gentian Violet, Geologic Sediments/*microbiology, Growth Inhibitors/pharmacology, Korea, Molecular Sequence Data, Phenazines, Phylogeny, Pigments, Biological/biosynthesis, Quinones/analysis/chemistry, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Saline Solution, Hypertonic/pharmacology, Seawater, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Temperature, Water Microbiology | Genetics |
| Phylogeny | 18319452 | Tenacibaculum adriaticum sp. nov., from a bryozoan in the Adriatic Sea. | Heindl H, Wiese J, Imhoff JF | Int J Syst Evol Microbiol | 10.1099/ijs.0.65383-0 | 2008 | Animals, Bacterial Typing Techniques, Base Composition, Bryozoa/*microbiology, Croatia, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification/physiology, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, *Seawater, Sequence Analysis, DNA, Species Specificity | Genetics |
| Phylogeny | 18398166 | Tenacibaculum aiptasiae sp. nov., isolated from a sea anemone Aiptasia pulchella. | Wang JT, Chou YJ, Chou JH, Chen CA, Chen WM | Int J Syst Evol Microbiol | 10.1099/ijs.0.65437-0 | 2008 | Animals, Base Composition, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/chemistry/classification/*genetics/*isolation & purification, Genes, Bacterial, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sea Anemones/*microbiology, Species Specificity, Terminology as Topic | Genetics |
| Phylogeny | 19628599 | Maritimimonas rapanae gen. nov., sp. nov., isolated from gut microflora of the veined rapa whelk, Rapana venosa. | Park SC, Baik KS, Kim D, Seong CN | Int J Syst Evol Microbiol | 10.1099/ijs.0.010504-0 | 2009 | Animals, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Flavobacteriaceae/classification/genetics/*isolation & purification/metabolism, Gastropoda/*microbiology, Intestines/microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology | Metabolism |
| Phylogeny | 23543245 | Tenacibaculum halocynthiae sp. nov., a member of the family Flavobacteriaceae isolated from sea squirt Halocynthia roretzi. | Kim YO, Park S, Nam BH, Jung YT, Kim DG, Jee YJ, Yoon JH | Antonie Van Leeuwenhoek | 10.1007/s10482-013-9913-5 | 2013 | Animals, Anti-Bacterial Agents/pharmacology, Bacterial Typing Techniques, Base Composition, Base Sequence, DNA, Bacterial/genetics, Fatty Acids, Genes, rRNA, Microbial Sensitivity Tests, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/microbiology, Sequence Analysis, DNA, Tenacibaculum/*classification/genetics/*isolation & purification/physiology, Urochordata/*microbiology | Genetics |
| Phylogeny | 23543502 | Tenacibaculum xiamenense sp. nov., an algicidal bacterium isolated from coastal seawater. | Li Y, Wei J, Yang C, Lai Q, Chen Z, Li D, Zhang H, Tian Y, Zheng W, Zheng T | Int J Syst Evol Microbiol | 10.1099/ijs.0.050765-0 | 2013 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Tenacibaculum/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/analysis, Water Microbiology | Genetics |
| Phylogeny | 23733002 | Tenacibaculum caenipelagi sp. nov., a member of the family Flavobacteriaceae isolated from tidal flat sediment. | Park S, Yoon JH | Antonie Van Leeuwenhoek | 10.1007/s10482-013-9941-1 | 2013 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Tenacibaculum/*classification/genetics/*isolation & purification | Enzymology |
| Phylogeny | 29521615 | Tenacibaculum todarodis sp. nov., isolated from a squid. | Shin SK, Kim E, Yi H | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002692 | 2018 | Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Decapodiformes/*microbiology, Fatty Acids/chemistry, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Tenacibaculum/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Stress | 35589967 | Consuming fresh macroalgae induces specific catabolic pathways, stress reactions and Type IX secretion in marine flavobacterial pioneer degraders. | Brunet M, Le Duff N, Barbeyron T, Thomas F | ISME J | 10.1038/s41396-022-01251-6 | 2022 |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 31796 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28067 | 28776041 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
| 68880 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-113392 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 113392) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 91793 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID297336.1 |