Strain identifier

BacDive ID: 134196

Type strain: Yes

Species: Chryseobacterium taiwanense

Strain Designation: Soil-3-27

Strain history: CIP <- 2006, IAM

NCBI tax ID(s): 363331 (species)

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General

@ref: 31793

BacDive-ID: 134196

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Chryseobacterium taiwanense Soil-3-27 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Soil of farmland regions.

NCBI tax id

  • NCBI tax id: 363331
  • Matching level: species

strain history

@refhistory
373162006, IAM
67770IAM 15317 <-- BCRC 17412 <-- C. C. Lo strain soil-3-27.
123419CIP <- 2006, IAM

doi: 10.13145/bacdive134196.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium taiwanense
  • full scientific name: Chryseobacterium taiwanense Tai et al. 2006

@ref: 31793

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Chryseobacterium

species: Chryseobacterium taiwanense

strain designation: Soil-3-27

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
31793negative1.06-2.24 µm0.58-0.85 µmrod-shapedno
123419negativerod-shapedno

pigmentation

  • @ref: 31793
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
37316MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123419CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
31793positivegrowth05-42
31793positiveoptimum30mesophilic
37316positivegrowth30mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
31793positivegrowth05-10alkaliphile
31793positiveoptimum06-08

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31793aerobe
123419obligate aerobe

spore formation

  • @ref: 31793
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31793NaClpositivegrowth4 %
31793NaClpositiveoptimum4 %

observation

@refobservation
31793aggregates in chains
67770quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3179340585alpha-cyclodextrin+carbon source
3179328757fructose+carbon source
3179317754glycerol+carbon source
3179316634raffinose+carbon source
317934853esculin+hydrolysis
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837117716lactose-builds acid from
6837117306maltose+builds acid from
6837117814salicin-builds acid from
683714853esculin+builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin+builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837116988D-ribose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
12341917632nitrate-reduction
12341916301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
3179335581indoleyes
12341935581indoleyes

metabolite tests

  • @ref: 31793
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
31793catalase+1.11.1.6
31793cytochrome oxidase+1.9.3.1
123419oxidase+
123419catalase+1.11.1.6
123419urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123419-+++-++++++++--+++--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
123419---+/--+/-----++/-+---------+-+-+/-+-+/------+/-+/--+----------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
67770Soil of farmland regionsWu-FengTaiwanTWNAsia
123419Environment, SoilWu FengTaiwanTWNAsia

Safety information

risk assessment

  • @ref: 123419
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 31793
  • description: Chryseobacterium taiwanense strain BCRC 17412 16S ribosomal RNA gene, partial sequence
  • accession: DQ318789
  • length: 1507
  • database: nuccore
  • NCBI tax ID: 363331

Genome sequences

  • @ref: 66792
  • description: Chryseobacterium taiwanense LMG 23355
  • accession: 2600255398
  • assembly level: draft
  • database: img
  • NCBI tax ID: 363331

GC content

@refGC-contentmethod
3179336.8
6777036.8high performance liquid chromatography (HPLC)

External links

@ref: 31793

culture collection no.: BCRC 17412, IAM 15317, LMG 23355, JCM 21767, CGMCC 1.11040, NCIMB 14327, CIP 109325

straininfo link

  • @ref: 91791
  • straininfo: 294439

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16902006Chryseobacterium taiwanense sp. nov., isolated from soil in Taiwan.Tai CJ, Kuo HP, Lee FL, Chen HK, Yokota A, Lo CCInt J Syst Evol Microbiol10.1099/ijs.0.64294-02006Base Composition, Chryseobacterium/chemistry/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, *Soil Microbiology, Species Specificity, Taiwan, Vitamin K 2/analysisGenetics
Phylogeny22634705Chryseobacterium taihuense sp. nov., isolated from a eutrophic lake, and emended descriptions of the genus Chryseobacterium, Chryseobacterium taiwanense, Chryseobacterium jejuense and Chryseobacterium indoltheticum.Wu YF, Wu QL, Liu SJInt J Syst Evol Microbiol10.1099/ijs.0.040337-02012Bacterial Typing Techniques, Base Composition, China, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Eutrophication, Fatty Acids/analysis, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/analogs & derivatives/analysis, Vitamin K 2/analogs & derivatives/analysis, Water MicrobiologyGenetics
Phylogeny24254740Chryseobacterium camelliae sp. nov., isolated from green tea.Kook M, Son HM, Ngo HTT, Yi THInt J Syst Evol Microbiol10.1099/ijs.0.057398-02013Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Tea/*microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny25273512Chryseobacterium takakiae sp. nov., a member of the phylum Bacteroidetes isolated from Takakia lepidozioides.Zhao R, Chen XY, Li XD, Chen ZL, Li YHInt J Syst Evol Microbiol10.1099/ijs.0.065888-02014Bacterial Typing Techniques, Base Composition, Bryophyta/*microbiology, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ice Cover, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tibet, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny25762725Chryseobacterium shandongense sp. nov., isolated from soil.Yang F, Liu HM, Zhang R, Chen DB, Wang X, Li SP, Hong QInt J Syst Evol Microbiol10.1099/ijs.0.0001862015Bacterial Typing Techniques, Base Composition, China, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/analogs & derivatives/chemistry, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny27902299Chryseobacterium nepalense sp. nov., isolated from oil-contaminated soil.Chaudhary DK, Kim JInt J Syst Evol Microbiol10.1099/ijsem.0.0016802017Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nepal, Nucleic Acid Hybridization, *Petroleum Pollution, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31793Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172806428776041
37316Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7054
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
91791Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID294439.1
123419Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109325Collection of Institut Pasteur (CIP 109325)