Strain identifier

BacDive ID: 134188

Type strain: Yes

Species: Pedobacter aquatilis

Strain Designation: AR107

Strain history: A. Ventosa AR107.

NCBI tax ID(s): 351343 (species)

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General

@ref: 31748

BacDive-ID: 134188

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Pedobacter aquatilis AR107 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from drinking water.

NCBI tax id

  • NCBI tax id: 351343
  • Matching level: species

strain history

  • @ref: 67770
  • history: A. Ventosa AR107.

doi: 10.13145/bacdive134188.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Sphingobacteriia
  • order: Sphingobacteriales
  • family: Sphingobacteriaceae
  • genus: Pedobacter
  • species: Pedobacter aquatilis
  • full scientific name: Pedobacter aquatilis Gallego et al. 2006

@ref: 31748

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Sphingobacteriales

family: Sphingobacteriaceae

genus: Pedobacter

species: Pedobacter aquatilis

strain designation: AR107

type strain: yes

Morphology

cell morphology

  • @ref: 31748
  • gram stain: negative
  • cell length: 02-06 µm
  • cell width: 0.8-1 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 31748
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperature
31748positivegrowth04-30
31748positiveoptimum25-28
60032positivegrowth30
67770positivegrowth28

culture pH

@refabilitytypepHPH range
31748positivegrowth05-09alkaliphile
31748positiveoptimum06-07

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31748aerobe
60032aerobe

spore formation

  • @ref: 31748
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31748NaClpositivegrowth0-1 %
31748NaClpositiveoptimum0-1 %

observation

@refobservation
31748aggregates in chains
67770quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3174822599arabinose+carbon source
3174828757fructose+carbon source
3174828260galactose+carbon source
3174817234glucose+carbon source
3174817716lactose+carbon source
3174817306maltose+carbon source
3174837684mannose+carbon source
3174828053melibiose+carbon source
31748506227N-acetylglucosamine+carbon source
3174816634raffinose+carbon source
3174826546rhamnose+carbon source
3174817814salicin+carbon source
3174817992sucrose+carbon source
3174827082trehalose+carbon source
6836917306maltose+assimilation
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
31748catalase+1.11.1.6
31748cytochrome oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase+3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
68369gelatinase-
68369urease-3.5.1.5
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382esterase lipase (C 8)+
68369cytochrome oxidase+1.9.3.1
68369beta-glucosidase+3.2.1.21
68369arginine dihydrolase-3.5.3.6

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
60032-+-+-++-+-++---++++-

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
60032-----+-++++-++------+

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
31748drinking water
60032Water,drinking2004-01-01SevillaSpainESPEurope
67770Drinking water distribution system of SevilleSpainESPEurope

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Freshwater

Sequence information

16S sequences

  • @ref: 31748
  • description: Pedobacter aquatilis partial 16S rRNA gene, type strain AR107T
  • accession: AM114396
  • length: 1450
  • database: nuccore
  • NCBI tax ID: 351343

GC content

@refGC-contentmethod
3174838
6777038thermal denaturation, midpoint method (Tm)

External links

@ref: 31748

culture collection no.: CCM 7347, CECT 7114, JCM 13454, CCUG 53834, NCIMB 14493

straininfo link

  • @ref: 91783
  • straininfo: 297282

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16902020Pedobacter aquatilis sp. nov., isolated from drinking water, and emended description of the genus Pedobacter.Gallego V, Garcia MT, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.64176-02006Bacteroidetes/chemistry/*classification/genetics/isolation & purification, Base Composition, Fatty Acids/analysis, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Spain, Species Specificity, *Water Microbiology, *Water SupplyGenetics
Phylogeny24573158Pedobacter jejuensis sp. nov., isolated from soil of a pine grove, and emended description of the genus Pedobacter.Kook M, Park Y, Yi THInt J Syst Evol Microbiol10.1099/ijs.0.058024-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Pedobacter/*classification/genetics/isolation & purification, Phosphatidylethanolamines/chemistry, *Phylogeny, Pinus/microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny27798744Pedobacter panacis sp. nov., isolated from Panax ginseng soil.Singh P, Singh H, Kim YJ, Yang DCAntonie Van Leeuwenhoek10.1007/s10482-016-0794-22016DNA, Bacterial/genetics, *Panax, Pedobacter/*classification/genetics/metabolism, Phospholipids/metabolism, Phylogeny, *Soil MicrobiologyMetabolism

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31748Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172802228776041
60032Curators of the CCUGhttps://www.ccug.se/strain?id=53834Culture Collection University of Gothenburg (CCUG) (CCUG 53834)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
91783Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID297282.1