Strain identifier
BacDive ID: 134178
Type strain: 
Species: Roseivirga spongicola
Strain history: S. Lau UST030701-084.
NCBI tax ID(s): 333140 (species)
version 8.1 (current version)
General
@ref: 64687
BacDive-ID: 134178
DSM-Number: 109152
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Roseivirga spongicola NRRL B-41219 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from marine sponge.
NCBI tax id
- NCBI tax id: 333140
- Matching level: species
strain history
- @ref: 67770
- history: S. Lau UST030701-084.
doi: 10.13145/bacdive134178.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Cytophagia
- order: Cytophagales
- family: Roseivirgaceae
- genus: Roseivirga
- species: Roseivirga spongicola
- full scientific name: Roseivirga spongicola Lau et al. 2006
@ref: 64687
domain: Bacteria
phylum: Bacteroidetes
class: Cytophagia
order: Cytophagales
family: Roseivirgaceae
genus: Roseivirga
species: Roseivirga spongicola
full scientific name: Roseivirga spongicola Lau et al. 2006 emend. Hahnke et al. 2016
type strain: yes
Morphology
cell morphology
- @ref: 31713
- gram stain: negative
- cell length: 2 µm
- cell width: 0.5 µm
- cell shape: rod-shaped
- motility: yes
- flagellum arrangement: gliding
pigmentation
- @ref: 31713
- production: no
Culture and growth conditions
culture medium
- @ref: 64687
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 64687 | positive | growth | 28 | mesophilic |
| 31713 | positive | growth | 12-44 | |
| 31713 | positive | optimum | 20-30 | |
| 67770 | positive | growth | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 31713 | positive | growth | 05-10 | alkaliphile |
| 31713 | positive | optimum | 07-10 |
Physiology and metabolism
oxygen tolerance
- @ref: 31713
- oxygen tolerance: aerobe
spore formation
- @ref: 31713
- spore formation: no
halophily
- @ref: 31713
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-16 %
observation
| @ref | observation |
|---|---|
| 31713 | aggregates in chains |
| 67770 | quinones: MK-7 |
metabolite utilization
- @ref: 31713
- Chebi-ID: 28644
- metabolite: 2-oxopentanoate
- utilization activity: +
- kind of utilization tested: carbon source
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31713 | acid phosphatase | + | 3.1.3.2 |
| 31713 | alkaline phosphatase | + | 3.1.3.1 |
| 31713 | catalase | + | 1.11.1.6 |
| 31713 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | host species |
|---|---|---|---|---|---|
| 31713 | marine sponge | ||||
| 64687 | marine Sponge Tedania ignis | Bahamas | BHS | Middle and South America | |
| 67770 | Marine sponge Tedania ignis | Bahamas | BHS | North America | Tedania ignis |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Host | #Invertebrates (Other) | #Porifera (Sponges) |
taxonmaps
- @ref: 69479
- File name: preview.99_6507.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_492;96_3079;97_3779;98_4801;99_6507&stattab=map
- Last taxonomy: Roseivirga spongicola subclade
- 16S sequence: DQ080996
- Sequence Identity:
- Total samples: 259
- soil counts: 4
- aquatic counts: 249
- animal counts: 4
- plant counts: 2
Safety information
risk assessment
- @ref: 64687
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 31713
- description: Roseivirga spongicola strain UST030701-084 16S ribosomal RNA gene, partial sequence
- accession: DQ080996
- length: 1387
- database: nuccore
- NCBI tax ID: 333140
GC content
| @ref | GC-content | method |
|---|---|---|
| 31713 | 43.7 | |
| 67770 | 43.1-44.3 | high performance liquid chromatography (HPLC) |
External links
@ref: 64687
culture collection no.: NRRL B-41219, JCM 13337, DSM 109152, CIP 109327
straininfo link
- @ref: 91776
- straininfo: 291137
literature
- topic: Phylogeny
- Pubmed-ID: 16627655
- title: Description of Fabibacter halotolerans gen. nov., sp. nov. and Roseivirga spongicola sp. nov., and reclassification of [Marinicola] seohaensis as Roseivirga seohaensis comb. nov.
- authors: Lau SCK, Tsoi MMY, Li X, Plakhotnikova I, Dobretsov S, Wu M, Wong PK, Pawlik JR, Qian PY
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64104-0
- year: 2006
- mesh: Aerobiosis, Animals, Bacterial Typing Techniques, Bahamas, Base Composition, Cytophagaceae/*classification/cytology/*isolation & purification/physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Gentian Violet, Marine Biology, Molecular Sequence Data, Movement, Phenazines, Phylogeny, Pigments, Biological/biosynthesis, Polyenes/analysis, Porifera/*microbiology, Quinones/analysis/isolation & purification, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed | catalogue | journal |
|---|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||||
| 31713 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27989 | 28776041 | ||
| 64687 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-109152 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 109152) | ||||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||||
| 91776 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID291137.1 |