Strain identifier
version 8.1 (current version)
General
@ref: 31640
BacDive-ID: 134165
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Larkinella insperata NCIMB 14103 is an aerobe, Gram-negative, motile bacterium that was isolated from water of steam generator.
NCBI tax id
- NCBI tax id: 332158
- Matching level: species
doi: 10.13145/bacdive134165.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Cytophagia
- order: Cytophagales
- family: Spirosomataceae
- genus: Larkinella
- species: Larkinella insperata
- full scientific name: Larkinella insperata Vancanneyt et al. 2006
@ref: 31640
domain: Bacteria
phylum: Bacteroidetes
class: Cytophagia
order: Cytophagales
family: Cytophagaceae
genus: Larkinella
species: Larkinella insperata
type strain: yes
Morphology
cell morphology
- @ref: 31640
- gram stain: negative
- cell length: 1.5-3 µm
- cell width: 0.5-0.9 µm
- cell shape: rod-shaped
- motility: yes
- flagellum arrangement: gliding
pigmentation
- @ref: 31640
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 31640 | positive | growth | 10-40 |
| 31640 | positive | optimum | 10-40 |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 31640 | positive | growth | 7 |
| 31640 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 31640
- oxygen tolerance: aerobe
spore formation
- @ref: 31640
- spore formation: no
observation
- @ref: 31640
- observation: aggregates in chains
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31640 | 22599 | arabinose | + | carbon source |
| 31640 | 17234 | glucose | + | carbon source |
| 31640 | 17716 | lactose | + | carbon source |
| 31640 | 37684 | mannose | + | carbon source |
| 31640 | 17992 | sucrose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31640 | alkaline phosphatase | + | 3.1.3.1 |
| 31640 | catalase | + | 1.11.1.6 |
| 31640 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 31640 | water of steam generator | |||
| 60669 | Water,steam generator in a pharmaceutical company | Belgium | BEL | Europe |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Engineered product |
| #Environmental | #Aquatic |
taxonmaps
- @ref: 69479
- File name: preview.99_153541.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_2062;96_8929;97_10737;98_13176;99_153541&stattab=map
- Last taxonomy: Larkinella insperata
- 16S sequence: AM000022
- Sequence Identity:
- Total samples: 939
- soil counts: 269
- aquatic counts: 165
- animal counts: 248
- plant counts: 257
Sequence information
16S sequences
- @ref: 31640
- description: Larkinella insperata 16S rRNA gene, type strain LMG 22510T
- accession: AM000022
- length: 1466
- database: nuccore
- NCBI tax ID: 332158
Genome sequences
- @ref: 66792
- description: Larkinella insperata LMG22510
- accession: GCA_026248825
- assembly level: complete
- database: ncbi
- NCBI tax ID: 332158
GC content
- @ref: 31640
- GC-content: 53
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 93.71 | no |
| flagellated | no | 97.58 | yes |
| gram-positive | no | 97.111 | no |
| anaerobic | no | 99.293 | no |
| aerobic | yes | 90.674 | yes |
| halophile | no | 96.947 | no |
| spore-forming | no | 93.821 | no |
| glucose-ferment | no | 82.538 | no |
| thermophile | no | 98.665 | no |
| glucose-util | yes | 83.382 | no |
External links
@ref: 31640
culture collection no.: NCIMB 14103, CCUG 55608, LMG 22510
straininfo link
- @ref: 91763
- straininfo: 132093
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 16403892 | Larkinella insperata gen. nov., sp. nov., a bacterium of the phylum 'Bacteroidetes' isolated from water of a steam generator. | Vancanneyt M, Nedashkovskaya OI, Snauwaert C, Mortier S, Vandemeulebroecke K, Hoste B, Dawyndt P, Frolova GM, Janssens D, Swings J | Int J Syst Evol Microbiol | 10.1099/ijs.0.63948-0 | 2006 | Base Composition, Drug Industry, Fatty Acids, Flexibacter/chemistry/*classification/isolation & purification/physiology, Molecular Sequence Data, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Species Specificity, Steam, *Water Microbiology | Genetics |
| Phylogeny | 18218952 | Rudanella lutea gen. nov., sp. nov., isolated from an air sample in Korea. | Weon HY, Noh HJ, Son JA, Jang HB, Kim BY, Kwon SW, Stackebrandt E | Int J Syst Evol Microbiol | 10.1099/ijs.0.65358-0 | 2008 | *Air Microbiology, Bacterial Typing Techniques, Cytophagaceae/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/analysis, Fatty Acids/analysis, Genes, rRNA, Genotype, Korea, Molecular Sequence Data, Phenotype, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity | Genetics |
| Phylogeny | 20139284 | Larkinella bovis sp. nov., isolated from fermented bovine products, and emended descriptions of the genus Larkinella and of Larkinella insperata Vancanneyt et al. 2006. | Anandham R, Kwon SW, Weon HY, Kim SJ, Kim YS, Gandhi PI, Kim YK, Jee HJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.020453-0 | 2010 | Animals, Base Composition, Catalase/metabolism, Cattle, Cluster Analysis, Cytophagaceae/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, *Food Microbiology, Locomotion, Molecular Sequence Data, Oxidoreductases/metabolism, Phospholipids/analysis, Phylogeny, Polyenes/analysis, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Metabolism |
| Phylogeny | 28417190 | Larkinella harenae sp. nov., Isolated from Korean Beach Soil. | Park SJ, Lee JJ, Lee SY, Lee DS, Kim MK, Ten LN, Jung HY | Curr Microbiol | 10.1007/s00284-017-1246-6 | 2017 | Bacterial Typing Techniques, Base Composition, Cytophagaceae/classification/genetics/*isolation & purification/metabolism, Fatty Acids/chemistry/metabolism, Phylogeny, Republic of Korea, *Soil Microbiology | Metabolism |
| Phylogeny | 28879840 | Larkinella ripae sp. nov., isolated from seashore soil. | Lee YH, Lee JJ, Lee SY, Lee DS, Kim MK, Ten LN, Jung HY | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002188 | 2017 | Bacterial Typing Techniques, Base Composition, Cytophagaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 29019013 | Larkinella terrae sp. nov., isolated from soil on Jeju Island, South Korea. | Ten LN, Jeon J, Park SJ, Park S, Lee SY, Kim MK, Jung HY | Antonie Van Leeuwenhoek | 10.1007/s10482-017-0955-y | 2017 | Base Composition, Cytophagaceae/chemistry/*classification/genetics/isolation & purification, *Islands, Metabolomics/methods, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology | Phenotype |
| Phylogeny | 29299846 | Larkinella roseus sp. nov., a species of the family Cytophagaceae isolated from beach soil. | Lee JB, Hong S, Lee SY, Park SJ, Park KI, Choi SG, Kim MK, Ten LN, Jung HY | J Microbiol | 10.1007/s12275-018-7476-x | 2018 | Base Composition, Cytophagaceae/classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Phosphatidylethanolamines/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology | Metabolism |
| Phylogeny | 29300161 | Larkinella knui sp. nov., isolated from soil. | Jeon J, Ten LN, Lee JJ, Lee SY, Park S, Cho YJ, Kim MK, Jung HY | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002550 | 2018 | Bacterial Typing Techniques, Base Composition, Cytophagaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 31640 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27923 | 28776041 | |
| 60669 | Curators of the CCUG | https://www.ccug.se/strain?id=55608 | Culture Collection University of Gothenburg (CCUG) (CCUG 55608) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 91763 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID132093.1 |