Strain identifier

BacDive ID: 134154

Type strain: Yes

Species: Nonlabens tegetincola

Strain Designation: UST030701-324

Strain history: S. Lau UST030701-324.

NCBI tax ID(s): 323273 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 8.1 (current version)

General

@ref: 31561

BacDive-ID: 134154

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Nonlabens tegetincola UST030701-324 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from estuarine sediment.

NCBI tax id

  • NCBI tax id: 323273
  • Matching level: species

strain history

  • @ref: 67770
  • history: S. Lau UST030701-324.

doi: 10.13145/bacdive134154.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Nonlabens
  • species: Nonlabens tegetincola
  • full scientific name: Nonlabens tegetincola Lau et al. 2005

  • synonyms

    @refsynonym
    20215Nonlabens sediminis
    20215Sandarakinotalea sediminis

@ref: 31561

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Nonlabens

species: Nonlabens tegetincola

strain designation: UST030701-324

type strain: yes

Morphology

cell morphology

  • @ref: 31561
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 31561
  • production: no

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31561positivegrowth12-44
31561positiveoptimum32mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
31561positivegrowth05-10alkaliphile
31561positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 31561
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31561
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31561NaClpositivegrowth02-04 %
31561NaClpositiveoptimum3 %

observation

  • @ref: 67770
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3156153424tween 20+carbon source
3156153423tween 40+carbon source
3156153426tween 80+carbon source

enzymes

@refvalueactivityec
31561acid phosphatase+3.1.3.2
31561alkaline phosphatase+3.1.3.1
31561catalase+1.11.1.6
31561gelatinase+
31561cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
31561estuarine sediment
67770Microbial mat in an estuaryBahamasBHSNorth America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Estuary
#Environmental#Aquatic#Sediment
#Environmental#Aquatic#Brackish

taxonmaps

  • @ref: 69479
  • File name: preview.99_3786.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_420;96_1946;97_2340;98_2886;99_3786&stattab=map
  • Last taxonomy: Nonlabens
  • 16S sequence: AY987349
  • Sequence Identity:
  • Total samples: 6285
  • soil counts: 126
  • aquatic counts: 5409
  • animal counts: 721
  • plant counts: 29

Sequence information

16S sequences

  • @ref: 31561
  • description: Nonlabens tegetincola strain UST030701-324 16S ribosomal RNA gene, partial sequence
  • accession: AY987349
  • length: 1462
  • database: nuccore
  • NCBI tax ID: 323273

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Nonlabens tegetincola JCM 12886GCA_002954355contigncbi323273
66792Nonlabens tegetincola strain JCM 12886323273.9wgspatric323273

GC content

@refGC-contentmethod
3156133.6
6777033.6high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno97.588yes
anaerobicno98.901yes
halophileno52.339no
spore-formingno94.579yes
glucose-utilyes81.129no
motileno87.684no
flagellatedno95.7yes
aerobicyes90.192yes
thermophileno99.002no
glucose-fermentno92.156no

External links

@ref: 31561

culture collection no.: NRRL B-41136, JCM 12886, NBRC 101533

straininfo link

  • @ref: 91752
  • straininfo: 281461

literature

  • topic: Phylogeny
  • Pubmed-ID: 16280483
  • title: Nonlabens tegetincola gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a microbial mat in a subtropical estuary.
  • authors: Lau SCK, Tsoi MMY, Li X, Plakhotnikova I, Dobretsov S, Wong PK, Pawlik JR, Qian PY
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.63810-0
  • year: 2005
  • mesh: Base Composition, DNA, Bacterial/analysis, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification/physiology, Molecular Sequence Data, Phylogeny, *Water Microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31561Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172785128776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91752Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID281461.1