Strain identifier

BacDive ID: 134126

Type strain: Yes

Species: Bizionia gelidisalsuginis

Strain Designation: IC164

Strain history: CIP <- 2004, J. Bowman, Tasmania, Australia: strain IC164

NCBI tax ID(s): 291188 (species)

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General

@ref: 31431

BacDive-ID: 134126

keywords: genome sequence, 16S sequence, Bacteria, aerobe, psychrophilic, Gram-negative, rod-shaped

description: Bizionia gelidisalsuginis IC164 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from Environment, Sea-ice brine.

NCBI tax id

  • NCBI tax id: 291188
  • Matching level: species

strain history

@refhistory
339852004, J. P. Bowman, Tasmania, Australia: strain IC164
119566CIP <- 2004, J. Bowman, Tasmania, Australia: strain IC164

doi: 10.13145/bacdive134126.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Bizionia
  • species: Bizionia gelidisalsuginis
  • full scientific name: Bizionia gelidisalsuginis Bowman and Nichols 2005

@ref: 31431

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Bizionia

species: Bizionia gelidisalsuginis

strain designation: IC164

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
31431negative2.5 µm0.45 µmrod-shapedno
119566negativerod-shapedno

pigmentation

  • @ref: 31431
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33985Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
119566CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
31431positiveoptimum12.5psychrophilic
33985positivegrowth20psychrophilic
119566positivegrowth5-22psychrophilic
119566nogrowth25mesophilic
119566nogrowth30mesophilic
119566nogrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 31431
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
31431NaClpositivegrowth0.2-3 %
31431NaClpositiveoptimum1 %
119566NaClnogrowth0 %
119566NaClnogrowth2 %
119566NaClnogrowth4 %
119566NaClnogrowth6 %
119566NaClnogrowth8 %
119566NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3143130089acetate+carbon source
3143116449alanine+carbon source
314315291gelatin+carbon source
3143127570histidine+carbon source
11956616947citrate-carbon source
1195664853esculin-hydrolysis
11956617632nitrate-reduction
11956616301nitrite-reduction

metabolite production

  • @ref: 119566
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11956615688acetoin-
11956617234glucose-

enzymes

@refvalueactivityec
31431alkaline phosphatase+3.1.3.1
31431gelatinase+
119566oxidase-
119566beta-galactosidase-3.2.1.23
119566alcohol dehydrogenase-1.1.1.1
119566gelatinase+
119566amylase-
119566DNase+
119566caseinase+3.4.21.50
119566catalase+1.11.1.6
119566tween esterase+
119566gamma-glutamyltransferase+2.3.2.2
119566lecithinase+
119566lipase+
119566lysine decarboxylase-4.1.1.18
119566ornithine decarboxylase-4.1.1.17
119566phenylalanine ammonia-lyase-4.3.1.24
119566protease+
119566tryptophan deaminase-
119566urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119566-+++-+----++--------

Isolation, sampling and environmental information

isolation

  • @ref: 119566
  • sample type: Environment, Sea-ice brine
  • geographic location: Vestfold hills
  • country: Antarctica
  • origin.country: ATA
  • continent: Antarctica
  • isolation date: 1999

taxonmaps

  • @ref: 69479
  • File name: preview.99_63007.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_107;96_6917;97_34584;98_44598;99_63007&stattab=map
  • Last taxonomy: Bizionia
  • 16S sequence: AY694004
  • Sequence Identity:
  • Total samples: 4
  • aquatic counts: 4

Safety information

risk assessment

  • @ref: 119566
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 31431
  • description: Bizionia gelidisalsuginis strain IC164 16S ribosomal RNA gene, partial sequence
  • accession: AY694004
  • length: 1408
  • database: nuccore
  • NCBI tax ID: 291188

Genome sequences

  • @ref: 66792
  • description: Bizionia gelidisalsuginis IC164
  • accession: GCA_008086185
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 291188

GC content

  • @ref: 31431
  • GC-content: 39

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno89.017yes
flagellatedno93.311no
gram-positiveno98.033no
anaerobicno99.208yes
aerobicyes87.218yes
halophileyes56.999no
spore-formingno94.191no
glucose-utilyes78.094no
thermophileno99.746yes
glucose-fermentno91.432no

External links

@ref: 31431

culture collection no.: ACAM 107, CIP 108536, ACAM 1057

straininfo link

  • @ref: 91727
  • straininfo: 265386

literature

  • topic: Phylogeny
  • Pubmed-ID: 16014468
  • title: Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp. nov., Subsaxibacter broadyi gen. nov., sp. nov., Lacinutrix copepodicola gen. nov., sp. nov., and novel species of the genera Bizionia, Gelidibacter and Gillisia.
  • authors: Bowman JP, Nichols DS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.63527-0
  • year: 2005
  • mesh: Amphipoda/microbiology, Animals, Antarctic Regions, Bacterial Typing Techniques, Copepoda/microbiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, *Environment, Eukaryota/microbiology, Flavobacteriaceae/*classification/genetics/isolation & purification/physiology, Genes, rRNA, Genotype, Ice Cover/microbiology, Molecular Sequence Data, Phenotype, Phylogeny, Quartz, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Species Specificity
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31431Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172773728776041
33985Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6169
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91727Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID265386.1
119566Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108536Collection of Institut Pasteur (CIP 108536)