Strain identifier
BacDive ID: 13411
Type strain: 
Species: Pseudonocardia yuanmonensis
Strain history: S.-K. Tang YIM 75926.
NCBI tax ID(s): 1095914 (species)
version 8.1 (current version)
General
@ref: 18042
BacDive-ID: 13411
DSM-Number: 45676
keywords: 16S sequence, Bacteria, mesophilic
description: Pseudonocardia yuanmonensis DSM 45676 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1095914
- Matching level: species
strain history
| @ref | history |
|---|---|
| 18042 | <- S.-K. Tang, YIM; YIM 75926 <- J. Zhang |
| 67770 | S.-K. Tang YIM 75926. |
doi: 10.13145/bacdive13411.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Pseudonocardia
- species: Pseudonocardia yuanmonensis
- full scientific name: Pseudonocardia yuanmonensis corrig. Nie et al. 2012
synonyms
- @ref: 20215
- synonym: Pseudonocardia yuanmoensis
@ref: 18042
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Pseudonocardia
species: Pseudonocardia yuanmonensis
full scientific name: Pseudonocardia yuanmonensis Nie et al. 2012
type strain: yes
Culture and growth conditions
culture medium
- @ref: 18042
- name: GPHF-MEDIUM (DSMZ Medium 553)
- growth: yes
- link: https://mediadive.dsmz.de/medium/553
- composition: Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 18042 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-8(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 18042 | soil | Yunnan Province, Yuanmo, soil forest | China | CHN | Asia |
| 67770 | Soil from the county of Yuanmo | Yunnan Province, south-west China | China | CHN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_112123.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_2672;97_3280;98_4781;99_112123&stattab=map
- Last taxonomy: Pseudonocardia
- 16S sequence: JN656709
- Sequence Identity:
- Total samples: 1128
- soil counts: 657
- aquatic counts: 140
- animal counts: 122
- plant counts: 209
Safety information
risk assessment
- @ref: 18042
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18042
- description: Pseudonocardia yuanmonensis strain YIM 75926 16S ribosomal RNA gene, partial sequence
- accession: JN656709
- length: 1518
- database: ena
- NCBI tax ID: 1095914
GC content
- @ref: 18042
- GC-content: 70.6
- method: high performance liquid chromatography (HPLC)
External links
@ref: 18042
culture collection no.: DSM 45676, CCTCC AA 2011017, JCM 18055, YIM 75926
straininfo link
- @ref: 82608
- straininfo: 400958
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 22200780 | Pseudonocardia yuanmoensis sp. nov., a novel actinobacterium isolated from soil in Yunnan, south-west China. | Nie GX, Ming H, Wei DQ, Zhou EM, Tang X, Cheng J, Tang SK, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-011-9689-4 | 2011 | Actinomycetales/chemistry/*classification/genetics/*isolation & purification, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/cytology, Trees, Vitamin K 2/analysis | Genetics |
| Phylogeny | 29683415 | Pseudonocardia lutea sp. nov., a novel actinobacterium isolated from soil in Chad. | Gao Y, Piao C, Wang H, Shi L, Guo X, Song J, Xiang W, Zhao J, Wang X | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002780 | 2018 | Actinobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Chad, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/analysis, Geologic Sediments/*microbiology, Glycolipids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18042 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45676) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45676 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 82608 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID400958.1 | StrainInfo: A central database for resolving microbial strain identifiers |