Strain identifier
BacDive ID: 134107
Type strain: 
Species: Treponema porcinum
Strain Designation: 14V28
NCBI tax ID(s): 261392 (species)
version 9.2 (current version)
General
@ref: 31355
BacDive-ID: 134107
keywords: 16S sequence, Bacteria, anaerobe, mesophilic, motile, spiral-shaped
description: Treponema porcinum 14V28 is an anaerobe, mesophilic, motile bacterium that was isolated from Swine Faeces.
NCBI tax id
- NCBI tax id: 261392
- Matching level: species
doi: 10.13145/bacdive134107.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/spirochaetota
- domain: Bacteria
- phylum: Spirochaetota
- class: Spirochaetia
- order: Spirochaetales
- family: Treponemataceae
- genus: Treponema
- species: Treponema porcinum
- full scientific name: Treponema porcinum Nordhoff et al. 2005
@ref: 31355
domain: Bacteria
phylum: Spirochaetes
class: Spirochaetes
order: Spirochaetales
family: Spirochaetaceae
genus: Treponema
species: Treponema porcinum
strain designation: 14V28
type strain: yes
Morphology
cell morphology
- @ref: 31355
- cell length: 7 µm
- cell width: 0.3 µm
- cell shape: spiral-shaped
- motility: yes
Culture and growth conditions
culture temp
- @ref: 31355
- growth: positive
- type: optimum
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 31355
- oxygen tolerance: anaerobe
observation
- @ref: 31355
- observation: aggregates in clumps
metabolite utilization
- @ref: 31355
- Chebi-ID: 17306
- metabolite: maltose
- utilization activity: +
- kind of utilization tested: carbon source
enzymes
- @ref: 31355
- value: acid phosphatase
- activity: +
- ec: 3.1.3.2
Isolation, sampling and environmental information
isolation
- @ref: 31355
- sample type: Swine Faeces
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Suidae (Pig,Swine) |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_9175.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_927;96_4380;97_5334;98_6744;99_9175&stattab=map
- Last taxonomy: Treponema porcinum subclade
- 16S sequence: AY518274
- Sequence Identity:
- Total samples: 24244
- soil counts: 786
- aquatic counts: 896
- animal counts: 22269
- plant counts: 293
Sequence information
16S sequences
- @ref: 31355
- description: Treponema porcinum strain 14V28 16S ribosomal RNA gene, partial sequence
- accession: AY518274
- length: 1426
- database: nuccore
- NCBI tax ID: 261392
External links
@ref: 31355
culture collection no.: ATCC BAA-908, CIP 108245, JCM 12342
straininfo link
- @ref: 91712
- straininfo: 265409
literature
- topic: Phylogeny
- Pubmed-ID: 16014500
- title: Treponema berlinense sp. nov. and Treponema porcinum sp. nov., novel spirochaetes isolated from porcine faeces.
- authors: Nordhoff M, Taras D, Macha M, Tedin K, Busse HJ, Wieler LH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.63388-0
- year: 2005
- mesh: Animals, Bacterial Typing Techniques, DNA, Bacterial, DNA, Ribosomal, Feces/*microbiology, Genes, rRNA, Lipids/analysis, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNA, Species Specificity, Swine/*microbiology, Treponema/chemistry/*classification/genetics/*isolation & purification
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 31355 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27668 | 28776041 | |
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 91712 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID265409.1 |