Strain identifier
BacDive ID: 134106
Type strain: 
Species: Treponema berlinense
Strain Designation: ACCAA-909, 7CPL208
NCBI tax ID(s): 225004 (species)
version 8.1 (current version)
General
@ref: 31355
BacDive-ID: 134106
keywords: 16S sequence, Bacteria, anaerobe, mesophilic, motile, spiral-shaped
description: Treponema berlinense ACCAA-909 is an anaerobe, mesophilic, motile bacterium that was isolated from Swine Faeces.
NCBI tax id
- NCBI tax id: 225004
- Matching level: species
doi: 10.13145/bacdive134106.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/spirochaetota
- domain: Bacteria
- phylum: Spirochaetota
- class: Spirochaetia
- order: Spirochaetales
- family: Treponemataceae
- genus: Treponema
- species: Treponema berlinense
- full scientific name: Treponema berlinense Nordhoff et al. 2005
@ref: 31355
domain: Bacteria
phylum: Spirochaetes
class: Spirochaetes
order: Spirochaetales
family: Spirochaetaceae
genus: Treponema
species: Treponema berlinense
strain designation: ACCAA-909, 7CPL208
type strain: yes
Morphology
cell morphology
- @ref: 31355
- cell length: 6 µm
- cell width: 0.3 µm
- cell shape: spiral-shaped
- motility: yes
Culture and growth conditions
culture temp
- @ref: 31355
- growth: positive
- type: optimum
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 31355
- oxygen tolerance: anaerobe
observation
- @ref: 31355
- observation: aggregates in clumps
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31355 | 22599 | arabinose | + | carbon source |
| 31355 | 28757 | fructose | + | carbon source |
| 31355 | 33984 | fucose | + | carbon source |
| 31355 | 24175 | galacturonate | + | carbon source |
| 31355 | 17234 | glucose | + | carbon source |
| 31355 | 17306 | maltose | + | carbon source |
| 31355 | 29864 | mannitol | + | carbon source |
| 31355 | 37684 | mannose | + | carbon source |
| 31355 | 26546 | rhamnose | + | carbon source |
| 31355 | 17992 | sucrose | + | carbon source |
| 31355 | 27082 | trehalose | + | carbon source |
enzymes
- @ref: 31355
- value: acid phosphatase
- activity: +
- ec: 3.1.3.2
Isolation, sampling and environmental information
isolation
- @ref: 31355
- sample type: Swine Faeces
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Suidae (Pig,Swine) |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_4406.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_464;96_2204;97_2669;98_3310;99_4406&stattab=map
- Last taxonomy: Treponema berlinense subclade
- 16S sequence: AY230217
- Sequence Identity:
- Total samples: 26994
- soil counts: 470
- aquatic counts: 653
- animal counts: 25614
- plant counts: 257
Sequence information
16S sequences
- @ref: 31355
- description: Treponema berlinense strain 7CPL208 16S ribosomal RNA gene, partial sequence
- accession: AY230217
- length: 1440
- database: nuccore
- NCBI tax ID: 225004
External links
@ref: 31355
culture collection no.: CIP 108244, JCM 12341
straininfo link
- @ref: 91711
- straininfo: 265408
literature
- topic: Phylogeny
- Pubmed-ID: 16014500
- title: Treponema berlinense sp. nov. and Treponema porcinum sp. nov., novel spirochaetes isolated from porcine faeces.
- authors: Nordhoff M, Taras D, Macha M, Tedin K, Busse HJ, Wieler LH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.63388-0
- year: 2005
- mesh: Animals, Bacterial Typing Techniques, DNA, Bacterial, DNA, Ribosomal, Feces/*microbiology, Genes, rRNA, Lipids/analysis, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNA, Species Specificity, Swine/*microbiology, Treponema/chemistry/*classification/genetics/*isolation & purification
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 31355 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27668 | 28776041 | |
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 91711 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID265408.1 |