Strain identifier

BacDive ID: 13410

Type strain: Yes

Species: Pseudonocardia bannensis

Strain history: <- S.-K. Tang, Yunnan Univ., Kunming; YIM 63101 <- G.-Z. Zhao

NCBI tax ID(s): 630973 (species)

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General

@ref: 16156

BacDive-ID: 13410

DSM-Number: 45300

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Pseudonocardia bannensis DSM 45300 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from surface-sterilized roots of Artemisia annua.

NCBI tax id

  • NCBI tax id: 630973
  • Matching level: species

strain history

  • @ref: 16156
  • history: <- S.-K. Tang, Yunnan Univ., Kunming; YIM 63101 <- G.-Z. Zhao

doi: 10.13145/bacdive13410.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Pseudonocardia
  • species: Pseudonocardia bannensis
  • full scientific name: Pseudonocardia bannensis corrig. Zhao et al. 2012

  • synonyms

    • @ref: 20215
    • synonym: Pseudonocardia bannaensis

@ref: 16156

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Pseudonocardia

species: Pseudonocardia bannensis

full scientific name: Pseudonocardia bannensis Zhao et al. 2012

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

multimedia

  • @ref: 16156
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45300.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16156GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
16156ISP2 MEDIUM (DSMZ Medium 987)yeshttps://mediadive.dsmz.de/medium/987Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water

culture temp

  • @ref: 16156
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69481
  • spore formation: yes
  • confidence: 92

Isolation, sampling and environmental information

isolation

  • @ref: 16156
  • sample type: surface-sterilized roots of Artemisia annua
  • host species: Artemisia annua
  • geographic location: Yunnan province
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root (Rhizome)
#Host Body-Site#Plant#Sterilized plant part

taxonmaps

  • @ref: 69479
  • File name: preview.99_99557.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_20724;97_25802;98_32751;99_99557&stattab=map
  • Last taxonomy: Pseudonocardia bannensis
  • 16S sequence: FJ817375
  • Sequence Identity:
  • Total samples: 182
  • soil counts: 147
  • aquatic counts: 11
  • animal counts: 12
  • plant counts: 12

Safety information

risk assessment

  • @ref: 16156
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16156
  • description: Pseudonocardia bannensis strain YIM 63101 16S ribosomal RNA gene, partial sequence
  • accession: FJ817375
  • length: 1422
  • database: ena
  • NCBI tax ID: 630973

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudonocardia bannensis DSM 45300GCA_012911875contigncbi630973
66792Pseudonocardia bannensis strain DSM 45300630973.3wgspatric630973

GC content

  • @ref: 16156
  • GC-content: 69.4
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes92no
gram-positiveyes87.649no
anaerobicno99.005no
halophileno90.973no
spore-formingyes66.093no
glucose-utilyes87.179no
thermophileno97.863yes
flagellatedno98.621no
aerobicyes93.762no
motileno93.733no
glucose-fermentno93.167no

External links

@ref: 16156

culture collection no.: DSM 45300, CCTCC AA 208077, YIM 63101

straininfo link

  • @ref: 82607
  • straininfo: 406032

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21336595Pseudonocardia bannaensis sp. nov., a novel actinomycete isolated from the surface-sterilized roots of Artemisia annua L.Zhao GZ, Li J, Zhu WY, Li XP, Tian SZ, Zhao LX, Xu LH, Li WJAntonie Van Leeuwenhoek10.1007/s10482-011-9562-52011Actinobacteria/classification/genetics/*isolation & purification, Artemisia annua/*microbiology, Base Composition, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/geneticsGenetics
Phylogeny28820114Pseudonocardia nigra sp. nov., isolated from Atacama Desert rock.Trujillo ME, Idris H, Riesco R, Nouioui I, Igual JM, Bull AT, Goodfellow MInt J Syst Evol Microbiol10.1099/ijsem.0.0020632017Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Chile, DNA, Bacterial/genetics, *Desert Climate, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
Phylogeny32931406Pseudonocardia acidicola sp. nov., a novel actinomycete isolated from peat swamp forest soil.Klaysubun C, Lipun K, Duangmal KInt J Syst Evol Microbiol10.1099/ijsem.0.0044592020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pseudonocardia/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistry, *WetlandsTranscriptome

Reference

@idauthorscataloguedoi/urltitle
16156Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45300)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45300
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
82607Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID406032.1StrainInfo: A central database for resolving microbial strain identifiers