Strain identifier
BacDive ID: 134099
Type strain: 
Species: Shewanella aquimarina
Strain Designation: SW-120
Strain history: J.-H. Yoon SW-120.
NCBI tax ID(s): 260365 (species)
version 7.1 (current version)
General
@ref: 31280
BacDive-ID: 134099
keywords: 16S sequence, Bacteria, anaerobe, Gram-negative, motile, rod-shaped
description: Shewanella aquimarina SW-120 is an anaerobe, Gram-negative, motile bacterium that was isolated from Seawater of the Yellow Sea.
NCBI tax id
- NCBI tax id: 260365
- Matching level: species
strain history: J.-H. Yoon SW-120.
doi: 10.13145/bacdive134099.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Shewanellaceae
- genus: Shewanella
- species: Shewanella aquimarina
- full scientific name: Shewanella aquimarina Yoon et al. 2004
@ref: 31280
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Shewanellaceae
genus: Shewanella
species: Shewanella aquimarina
strain designation: SW-120
type strain: yes
Morphology
cell morphology
- @ref: 31280
- gram stain: negative
- cell length: 3 µm
- cell width: 0.75 µm
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
- @ref: 42247
- name: Marine agar (MA)
- growth: yes
- composition: Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 31280 | positive | growth | 10-42 | |
| 31280 | positive | optimum | 33.5 | mesophilic |
| 42247 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 31280 | positive | growth | 05-08 |
| 31280 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 31280
- oxygen tolerance: anaerobe
spore formation
- @ref: 31280
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31280 | NaCl | positive | growth | 02-08 % |
| 31280 | NaCl | positive | optimum | 2.5 % |
observation
- @ref: 67770
- observation: quinones: Q-7, Q-8, MK-7
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31280 | 28260 | galactose | + | carbon source |
| 31280 | 24996 | lactate | + | carbon source |
| 31280 | 25115 | malate | + | carbon source |
| 31280 | 17306 | maltose | + | carbon source |
| 31280 | 30031 | succinate | + | carbon source |
| 31280 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 31280
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: yes
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31280 | catalase | + | 1.11.1.6 |
| 31280 | gelatinase | + | |
| 31280 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Seawater of the Yellow Sea
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_1310.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_59;96_759;97_884;98_1035;99_1310&stattab=map
- Last taxonomy: Shewanella loihica
- 16S sequence: AY485225
- Sequence Identity:
- Total samples: 1108
- soil counts: 89
- aquatic counts: 720
- animal counts: 279
- plant counts: 20
Sequence information
16S sequences
- @ref: 31280
- description: Shewanella aquimarina 16S ribosomal RNA gene, partial sequence
- accession: AY485225
- length: 1499
- database: nuccore
- NCBI tax ID: 260365
Genome sequences
- @ref: 66792
- description: Shewanella aquimarina JCM 12193
- accession: GCA_023349185
- assembly level: contig
- database: ncbi
- NCBI tax ID: 260365
GC content
| @ref | GC-content | method |
|---|---|---|
| 31280 | 54 | |
| 67770 | 54 | high performance liquid chromatography (HPLC) |
External links
@ref: 31280
culture collection no.: KCCM 41821, JCM 12193, CIP 108633, KCTC 22430
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/381844 |
| 20218 | http://www.straininfo.net/strains/381843 |
literature
- topic: Phylogeny
- Pubmed-ID: 15545482
- title: Shewanella marisflavi sp. nov. and Shewanella aquimarina sp. nov., slightly halophilic organisms isolated from sea water of the Yellow Sea in Korea.
- authors: Yoon JH, Yeo SH, Kim IG, Oh TK
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.63198-0
- year: 2004
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Fatty Acids/analysis/isolation & purification, Genes, rRNA, Gentian Violet, Korea, Molecular Sequence Data, Movement, Oceans and Seas, Phenazines, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Shewanella/*classification/cytology/*isolation & purification/physiology, Spores, Bacterial, Ubiquinone/analysis/isolation & purification, Vitamin K 2/analysis/isolation & purification, Water Microbiology
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | journal | pubmed | ID_cross_reference |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | StrainInfo introduces electronic passports for microorganisms. | 10.1016/j.syapm.2013.11.002 | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 27600 | 10.1099/ijs.0.63198-0 | 15545482 | ||||
| 31280 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28776041 | 27600 | |
| 42247 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/6283 | ||||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |