Strain identifier
BacDive ID: 134094
Type strain: 
Species: Paracoccus haeundaensis
Strain Designation: LMGP-21903
NCBI tax ID(s): 225362 (species)
version 8.1 (current version)
General
@ref: 31256
BacDive-ID: 134094
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Paracoccus haeundaensis LMGP-21903 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 225362
- Matching level: species
doi: 10.13145/bacdive134094.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Paracoccaceae
- genus: Paracoccus
- species: Paracoccus haeundaensis
- full scientific name: Paracoccus haeundaensis Lee et al. 2004
@ref: 31256
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Paracoccus
species: Paracoccus haeundaensis
strain designation: LMGP-21903
type strain: yes
Morphology
cell morphology
- @ref: 31256
- gram stain: negative
- cell length: 1.65 µm
- cell width: 0.5 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 31256
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 31256 | positive | growth | 20-37 | |
| 31256 | positive | optimum | 25 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 31256 | positive | growth | 6-10.5 | alkaliphile |
| 31256 | positive | optimum | 8 |
Physiology and metabolism
oxygen tolerance
- @ref: 31256
- oxygen tolerance: aerobe
spore formation
- @ref: 31256
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31256 | NaCl | positive | growth | <8 % |
| 31256 | NaCl | positive | optimum | 3.5 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31256 | 22599 | arabinose | + | carbon source |
| 31256 | 16947 | citrate | + | carbon source |
| 31256 | 28260 | galactose | + | carbon source |
| 31256 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31256 | catalase | + | 1.11.1.6 |
| 31256 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 31256
- sample type: seawater
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_889.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_529;97_610;98_701;99_889&stattab=map
- Last taxonomy: Paracoccus
- 16S sequence: AY189743
- Sequence Identity:
- Total samples: 10998
- soil counts: 923
- aquatic counts: 3236
- animal counts: 6383
- plant counts: 456
Sequence information
16S sequences
- @ref: 31256
- description: Paracoccus haeundaesis strain BC74171 16S ribosomal RNA gene, complete sequence
- accession: AY189743
- length: 1408
- database: nuccore
- NCBI tax ID: 225362
GC content
- @ref: 31256
- GC-content: 66.9
External links
@ref: 31256
culture collection no.: KCCM 10460, BC 74171
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15388731 | Paracoccus haeundaensis sp. nov., a Gram-negative, halophilic, astaxanthin-producing bacterium. | Lee JH, Kim YS, Choi TJ, Lee WJ, Kim YT | Int J Syst Evol Microbiol | 10.1099/ijs.0.63146-0 | 2004 | DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Fatty Acids/analysis, Genes, rRNA, Korea, Microscopy, Electron, Transmission, Molecular Sequence Data, Paracoccus/*classification/*isolation & purification/physiology/ultrastructure, Phylogeny, Pigments, Biological/biosynthesis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Water Microbiology, Xanthophylls, beta Carotene/*analogs & derivatives/*biosynthesis | Enzymology |
| Phylogeny | 19329608 | Paracoccus aestuarii sp. nov., isolated from tidal flat sediment. | Roh SW, Nam YD, Chang HW, Kim KH, Kim MS, Shin KS, Yoon JH, Oh HM, Bae JW | Int J Syst Evol Microbiol | 10.1099/ijs.0.65759-0 | 2009 | Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Paracoccus/*classification/genetics/*isolation & purification/physiology, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid | Genetics |
| Phylogeny | 28741997 | Paracoccus hibiscisoli sp. nov., isolated from the rhizosphere of Mugunghwa (Hibiscus syriacus). | Lin P, Yan ZF, Won KH, Yang JE, Li CT, Kook M, Wang QJ, Yi TH | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001990 | 2017 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hibiscus/*microbiology, Nucleic Acid Hybridization, Paracoccus/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry | Transcriptome |
| Pathogenicity | 31493630 | Extracellular synthesis of gold nanoparticles using the marine bacterium Paracoccus haeundaensis BC74171(T) and evaluation of their antioxidant activity and antiproliferative effect on normal and cancer cell lines. | Patil MP, Kang MJ, Niyonizigiye I, Singh A, Kim JO, Seo YB, Kim GD | Colloids Surf B Biointerfaces | 10.1016/j.colsurfb.2019.110455 | 2019 | A549 Cells, Anti-Bacterial Agents/chemistry/*pharmacology, Antioxidants/chemistry/*pharmacology, Cell Line, Tumor, Cell Proliferation/*drug effects, Cell Survival/drug effects, Extracellular Space/metabolism, Gold/*chemistry, HEK293 Cells, Humans, Metal Nanoparticles/*chemistry, Microbial Sensitivity Tests, Paracoccus/*metabolism, Seawater/microbiology | Metabolism |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 31256 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27579 | 28776041 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |