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Strain identifier

BacDive ID: 134094

Type strain: Yes

Species: Paracoccus haeundaensis

Strain Designation: LMGP-21903

NCBI tax ID(s): 225362 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 31256

BacDive-ID: 134094

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Paracoccus haeundaensis LMGP-21903 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 225362
  • Matching level: species

doi: 10.13145/bacdive134094.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Rhodobacteraceae
  • genus: Paracoccus
  • species: Paracoccus haeundaensis
  • full scientific name: Paracoccus haeundaensis Lee et al. 2004

@ref: 31256

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Paracoccus

species: Paracoccus haeundaensis

strain designation: LMGP-21903

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31256negative1.65 µm0.5 µmrod-shapedno
69480negative99.169

pigmentation

  • @ref: 31256
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31256positivegrowth20-37
31256positiveoptimum25mesophilic

culture pH

@refabilitytypepHPH range
31256positivegrowth6-10.5alkaliphile
31256positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 31256
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
31256no
69480no97.505

halophily

@refsaltgrowthtested relationconcentrationhalophily levelconfidence
31256NaClpositivegrowth<8 %
31256NaClpositiveoptimum3.5 %
69480non-halophilic96.099

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3125622599arabinose+carbon source
3125616947citrate+carbon source
3125628260galactose+carbon source
3125617632nitrate+reduction

enzymes

@refvalueactivityec
31256catalase+1.11.1.6
31256cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 31256
  • sample type: seawater

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_889.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_529;97_610;98_701;99_889&stattab=map
  • Last taxonomy: Paracoccus
  • 16S sequence: AY189743
  • Sequence Identity:
  • Total samples: 10998
  • soil counts: 923
  • aquatic counts: 3236
  • animal counts: 6383
  • plant counts: 456

Sequence information

16S sequences

  • @ref: 31256
  • description: Paracoccus haeundaesis strain BC74171 16S ribosomal RNA gene, complete sequence
  • accession: AY189743
  • length: 1408
  • database: nuccore
  • NCBI tax ID: 225362

GC content

  • @ref: 31256
  • GC-content: 66.9

External links

@ref: 31256

culture collection no.: KCCM 10460, BC 74171

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/381498

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15388731Paracoccus haeundaensis sp. nov., a Gram-negative, halophilic, astaxanthin-producing bacterium.Lee JH, Kim YS, Choi TJ, Lee WJ, Kim YTInt J Syst Evol Microbiol10.1099/ijs.0.63146-02004DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Fatty Acids/analysis, Genes, rRNA, Korea, Microscopy, Electron, Transmission, Molecular Sequence Data, Paracoccus/*classification/*isolation & purification/physiology/ultrastructure, Phylogeny, Pigments, Biological/biosynthesis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Water Microbiology, Xanthophylls, beta Carotene/*analogs & derivatives/*biosynthesisEnzymology
Phylogeny19329608Paracoccus aestuarii sp. nov., isolated from tidal flat sediment.Roh SW, Nam YD, Chang HW, Kim KH, Kim MS, Shin KS, Yoon JH, Oh HM, Bae JWInt J Syst Evol Microbiol10.1099/ijs.0.65759-02009Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Paracoccus/*classification/genetics/*isolation & purification/physiology, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic AcidGenetics
Phylogeny28741997Paracoccus hibiscisoli sp. nov., isolated from the rhizosphere of Mugunghwa (Hibiscus syriacus).Lin P, Yan ZF, Won KH, Yang JE, Li CT, Kook M, Wang QJ, Yi THInt J Syst Evol Microbiol10.1099/ijsem.0.0019902017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hibiscus/*microbiology, Nucleic Acid Hybridization, Paracoccus/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryTranscriptome
Pathogenicity31493630Extracellular synthesis of gold nanoparticles using the marine bacterium Paracoccus haeundaensis BC74171(T) and evaluation of their antioxidant activity and antiproliferative effect on normal and cancer cell lines.Patil MP, Kang MJ, Niyonizigiye I, Singh A, Kim JO, Seo YB, Kim GDColloids Surf B Biointerfaces10.1016/j.colsurfb.2019.1104552019A549 Cells, Anti-Bacterial Agents/chemistry/*pharmacology, Antioxidants/chemistry/*pharmacology, Cell Line, Tumor, Cell Proliferation/*drug effects, Cell Survival/drug effects, Extracellular Space/metabolism, Gold/*chemistry, HEK293 Cells, Humans, Metal Nanoparticles/*chemistry, Microbial Sensitivity Tests, Paracoccus/*metabolism, Seawater/microbiologyMetabolism

Reference

@idauthorstitledoi/urljournalpubmedID_cross_reference
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
2757910.1099/ijs.0.63146-015388731
31256Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172877604127579
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes