Strain identifier
BacDive ID: 134085
Type strain:
Species: Marinobacter mobilis
Strain history: X.-W. Xu CN46.
NCBI tax ID(s): 488533 (species)
version 8.1 (current version)
General
@ref: 31195
BacDive-ID: 134085
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Marinobacter mobilis CGMCC 1.7059 is an aerobe, Gram-negative, motile bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 488533
- Matching level: species
strain history
- @ref: 67770
- history: X.-W. Xu CN46.
doi: 10.13145/bacdive134085.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Marinobacter
- species: Marinobacter mobilis
- full scientific name: Marinobacter mobilis Huo et al. 2008
@ref: 31195
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Marinobacter
species: Marinobacter mobilis
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | confidence |
---|---|---|---|---|---|---|
31195 | negative | 1.5-3 µm | 0.5-0.8 µm | rod-shaped | yes | |
69480 | yes | 93.103 | ||||
69480 | negative | 99.99 |
pigmentation
- @ref: 31195
- production: no
Culture and growth conditions
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
31195 | positive | growth | 15-42 | |
31195 | positive | optimum | 30-35 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
31195 | positive | growth | 6.5-9 | alkaliphile |
31195 | positive | optimum | 7-7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 31195
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
31195 | no | |
69481 | no | 100 |
69480 | no | 99.999 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
31195 | NaCl | positive | growth | 0.5-10 % |
31195 | NaCl | positive | optimum | 03-05 % |
observation
- @ref: 31195
- observation: aggregates in chains
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31195 | 30089 | acetate | + | carbon source |
31195 | 29987 | glutamate | + | carbon source |
31195 | 24996 | lactate | + | carbon source |
31195 | 25115 | malate | + | carbon source |
31195 | 17272 | propionate | + | carbon source |
31195 | 15361 | pyruvate | + | carbon source |
31195 | 30031 | succinate | + | carbon source |
31195 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 31195
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: yes
enzymes
@ref | value | activity | ec |
---|---|---|---|
31195 | catalase | + | 1.11.1.6 |
31195 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
31195 | marine sediment | ||||
67770 | Marine sediment | Zhejiang | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_99317.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_693;97_4347;98_56188;99_99317&stattab=map
- Last taxonomy: Marinobacter mobilis subclade
- 16S sequence: EU293412
- Sequence Identity:
- Total samples: 2
- aquatic counts: 2
Sequence information
16S sequences
- @ref: 31195
- description: Marinobacter mobilis strain CN46 16S ribosomal RNA gene, partial sequence
- accession: EU293412
- length: 1429
- database: nuccore
- NCBI tax ID: 488533
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Marinobacter mobilis strain CGMCC 1.7059 | 488533.3 | wgs | patric | 488533 |
66792 | Marinobacter mobilis CGMCC 1.7059 | 2617270765 | draft | img | 488533 |
67770 | Marinobacter mobilis CGMCC 1.7059 | GCA_900106945 | scaffold | ncbi | 488533 |
GC content
@ref | GC-content | method |
---|---|---|
31195 | 58.4 | |
67770 | 58.0-58.9 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
gram-positive | no | 98.877 | yes |
anaerobic | no | 97.545 | no |
halophile | yes | 92.382 | no |
spore-forming | no | 96.618 | no |
glucose-util | no | 57.284 | no |
aerobic | yes | 89.38 | yes |
thermophile | no | 98.549 | yes |
motile | yes | 91.8 | no |
flagellated | yes | 91.965 | no |
glucose-ferment | no | 85.871 | no |
External links
@ref: 31195
culture collection no.: CGMCC 1.7059, JCM 15154, CN 46
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 19060077 | Marinobacter mobilis sp. nov. and Marinobacter zhejiangensis sp. nov., halophilic bacteria isolated from the East China Sea. | Huo YY, Wang CS, Yang JY, Wu M, Xu XW | Int J Syst Evol Microbiol | 10.1099/ijs.0.2008/000786-0 | 2008 | China, Geologic Sediments/*microbiology, Marinobacter/*classification/genetics/*physiology, Molecular Sequence Data, Oceans and Seas, Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity | Genetics |
Phylogeny | 22003037 | Marinobacter xestospongiae sp. nov., isolated from the marine sponge Xestospongia testudinaria collected from the Red Sea. | Lee OO, Lai PY, Wu HX, Zhou XJ, Miao L, Wang H, Qian PY | Int J Syst Evol Microbiol | 10.1099/ijs.0.028811-0 | 2011 | Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids, Indian Ocean, Marinobacter/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Xestospongia/*microbiology | Genetics |
Phylogeny | 25835026 | Marinobacter nitratireducens sp. nov., a halophilic and lipolytic bacterium isolated from coastal surface sea water. | Vaidya B, Kumar R, Korpole S, Tanuku NRS, Pinnaka AK | Int J Syst Evol Microbiol | 10.1099/ijs.0.000218 | 2015 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, Marinobacter/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry, Water Microbiology | Genetics |
Reference
@id | authors | title | doi/url | ID_cross_reference | pubmed | journal |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
31195 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27522 | 28776041 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |