Strain identifier

BacDive ID: 134085

Type strain: Yes

Species: Marinobacter mobilis

Strain history: X.-W. Xu CN46.

NCBI tax ID(s): 488533 (species)

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General

@ref: 31195

BacDive-ID: 134085

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Marinobacter mobilis CGMCC 1.7059 is an aerobe, Gram-negative, motile bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 488533
  • Matching level: species

strain history

  • @ref: 67770
  • history: X.-W. Xu CN46.

doi: 10.13145/bacdive134085.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Marinobacter
  • species: Marinobacter mobilis
  • full scientific name: Marinobacter mobilis Huo et al. 2008

@ref: 31195

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Marinobacter

species: Marinobacter mobilis

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31195negative1.5-3 µm0.5-0.8 µmrod-shapedyes
125438yes90.024
125438negative98.5
125439negative99.8

pigmentation

  • @ref: 31195
  • production: no

Culture and growth conditions

culture temp

@refgrowthtypetemperature
31195positivegrowth15-42
31195positiveoptimum30-35
67770positivegrowth30

culture pH

@refabilitytypepHPH range
31195positivegrowth6.5-9alkaliphile
31195positiveoptimum7-7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 31195
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
31195no
125438no91.427
125439no99.6

halophily

@refsaltgrowthtested relationconcentration
31195NaClpositivegrowth0.5-10 %
31195NaClpositiveoptimum03-05 %

observation

  • @ref: 31195
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3119530089acetate+carbon source
3119529987glutamate+carbon source
3119524996lactate+carbon source
3119525115malate+carbon source
3119517272propionate+carbon source
3119515361pyruvate+carbon source
3119530031succinate+carbon source
3119517632nitrate+reduction

metabolite production

  • @ref: 31195
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

enzymes

@refvalueactivityec
31195catalase+1.11.1.6
31195cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
31195marine sediment
67770Marine sedimentZhejiangChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_99317.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_693;97_4347;98_56188;99_99317&stattab=map
  • Last taxonomy: Marinobacter mobilis subclade
  • 16S sequence: EU293412
  • Sequence Identity:
  • Total samples: 2
  • aquatic counts: 2

Sequence information

16S sequences

  • @ref: 31195
  • description: Marinobacter mobilis strain CN46 16S ribosomal RNA gene, partial sequence
  • accession: EU293412
  • length: 1429
  • database: nuccore
  • NCBI tax ID: 488533

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Marinobacter mobilis strain CGMCC 1.7059488533.3wgspatric488533
66792Marinobacter mobilis CGMCC 1.70592617270765draftimg488533
67770Marinobacter mobilis CGMCC 1.7059GCA_900106945scaffoldncbi488533

GC content

@refGC-contentmethod
3119558.4
6777058.0-58.9thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno98.5yes
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.797yes
125438spore-formingspore-formingAbility to form endo- or exosporesno91.427yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes84.959yes
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno97.814no
125438motile2+flagellatedAbility to perform flagellated movementyes90.024no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno99.6
125439BacteriaNetmotilityAbility to perform movementyes89.9
125439BacteriaNetgram_stainReaction to gram-stainingnegative99.8
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthfacultative aerobe70.9

External links

@ref: 31195

culture collection no.: CGMCC 1.7059, JCM 15154, CN 46

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19060077Marinobacter mobilis sp. nov. and Marinobacter zhejiangensis sp. nov., halophilic bacteria isolated from the East China Sea.Huo YY, Wang CS, Yang JY, Wu M, Xu XWInt J Syst Evol Microbiol10.1099/ijs.0.2008/000786-02008China, Geologic Sediments/*microbiology, Marinobacter/*classification/genetics/*physiology, Molecular Sequence Data, Oceans and Seas, Phylogeny, RNA, Ribosomal, 16S/genetics, Species SpecificityGenetics
Phylogeny22003037Marinobacter xestospongiae sp. nov., isolated from the marine sponge Xestospongia testudinaria collected from the Red Sea.Lee OO, Lai PY, Wu HX, Zhou XJ, Miao L, Wang H, Qian PYInt J Syst Evol Microbiol10.1099/ijs.0.028811-02011Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids, Indian Ocean, Marinobacter/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Xestospongia/*microbiologyGenetics
Phylogeny25835026Marinobacter nitratireducens sp. nov., a halophilic and lipolytic bacterium isolated from coastal surface sea water.Vaidya B, Kumar R, Korpole S, Tanuku NRS, Pinnaka AKInt J Syst Evol Microbiol10.1099/ijs.0.0002182015Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, Marinobacter/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry, Water MicrobiologyGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmedjournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31195Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172752228776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa102533211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG