Strain identifier

BacDive ID: 134078

Type strain: Yes

Species: Mesorhizobium gobiense

NCBI tax ID(s): 410756 (species)

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General

@ref: 31182

BacDive-ID: 134078

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Mesorhizobium gobiense LMG 23949 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 410756
  • Matching level: species

doi: 10.13145/bacdive134078.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Phyllobacteriaceae
  • genus: Mesorhizobium
  • species: Mesorhizobium gobiense
  • full scientific name: Mesorhizobium gobiense Han et al. 2008

@ref: 31182

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Phyllobacteriaceae

genus: Mesorhizobium

species: Mesorhizobium gobiense

type strain: yes

Morphology

cell morphology

  • @ref: 31182
  • gram stain: negative
  • cell length: 01-03 µm
  • cell width: 0.3-0.6 µm
  • cell shape: rod-shaped

pigmentation

  • @ref: 31182
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31182positivegrowth25-37mesophilic
31182positiveoptimum25-30mesophilic

culture pH

@refabilitytypepHPH range
31182positivegrowth05-09alkaliphile
31182positiveoptimum06-08

Physiology and metabolism

oxygen tolerance

  • @ref: 31182
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31182
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31182NaClpositivegrowth1 %
31182NaClpositiveoptimum1 %

observation

  • @ref: 31182
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3118222599arabinose+carbon source
3118229016arginine+carbon source
3118235391aspartate+carbon source
3118228757fructose+carbon source
3118228260galactose+carbon source
3118217234glucose+carbon source
3118217716lactose+carbon source
3118225115malate+carbon source
3118217306maltose+carbon source
3118237684mannose+carbon source
3118226271proline+carbon source
3118226546rhamnose+carbon source
3118217992sucrose+carbon source
3118227082trehalose+carbon source
3118218222xylose+carbon source

enzymes

@refvalueactivityec
31182catalase+1.11.1.6
31182cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 31182
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_1684.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_220;97_239;98_268;99_1684&stattab=map
  • Last taxonomy: Mesorhizobium
  • 16S sequence: EF035064
  • Sequence Identity:
  • Total samples: 4459
  • soil counts: 2635
  • aquatic counts: 507
  • animal counts: 282
  • plant counts: 1035

Sequence information

16S sequences

  • @ref: 31182
  • description: Mesorhizobium gobiense strain CCBAU 83330 16S ribosomal RNA gene, partial sequence
  • accession: EF035064
  • length: 1353
  • database: nuccore
  • NCBI tax ID: 410756

GC content

  • @ref: 31182
  • GC-content: 57.86

External links

@ref: 31182

culture collection no.: LMG 23949, HAMBI 2974, CCBAU 83330

straininfo link

  • @ref: 91695
  • straininfo: 293628

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18984702Mesorhizobium gobiense sp. nov. and Mesorhizobium tarimense sp. nov., isolated from wild legumes growing in desert soils of Xinjiang, China.Han TX, Han LL, Wu LJ, Chen WF, Sui XH, Gu JG, Wang ET, Chen WXInt J Syst Evol Microbiol10.1099/ijs.0.2008/000125-02008Alphaproteobacteria/chemistry/*classification/genetics/isolation & purification, Bacterial Proteins/analysis/genetics, China, DNA, Ribosomal Spacer/analysis, *Desert Climate, Electrophoresis, Polyacrylamide Gel, Fabaceae/growth & development/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Polymerase Chain Reaction/methods, Polymorphism, Restriction Fragment Length, Sequence Analysis, DNA, *Soil/analysis, Species SpecificityEnzymology
Phylogeny25667389Methylobrevis pamukkalensis gen. nov., sp. nov., a halotolerant restricted facultative methylotroph isolated from saline water.Poroshina MN, Trotsenko YA, Doronina NVInt J Syst Evol Microbiol10.1099/ijs.0.0001052015Alphaproteobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hot Springs/*microbiology, Hydroxybutyrates/chemistry, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, Polyesters/chemistry, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Turkey, Ubiquinone/chemistryGenetics
Phylogeny28693668Mesorhizobium helmanticense sp. nov., isolated from Lotus corniculatus nodules.Marcos-Garcia M, Menendez E, Ramirez-Bahena MH, Mateos PF, Peix A, Velazquez E, Rivas RInt J Syst Evol Microbiol10.1099/ijsem.0.0019422017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lotus/*microbiology, Mesorhizobium/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Spain, SymbiosisTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31182Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172750928776041
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91695Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID293628.1