Strain identifier
BacDive ID: 134068
Type strain: 
Species: Nocardioides conyzicola
Strain Designation: BP781702
Strain history: <- SB Kim, Chungnam Natl. Univ.
NCBI tax ID(s): 1651781 (species)
version 8.1 (current version)
General
@ref: 31166
BacDive-ID: 134068
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped
description: Nocardioides conyzicola BP781702 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from plant associated.
NCBI tax id
- NCBI tax id: 1651781
- Matching level: species
strain history
| @ref | history |
|---|---|
| 67770 | S. B. Kim HWE 2-02. |
| 67771 | <- SB Kim, Chungnam Natl. Univ. |
doi: 10.13145/bacdive134068.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Nocardioidaceae
- genus: Nocardioides
- species: Nocardioides conyzicola
- full scientific name: Nocardioides conyzicola Han et al. 2013
@ref: 31166
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Propionibacteriales
family: Nocardioidaceae
genus: Nocardioides
species: Nocardioides conyzicola
strain designation: BP781702
type strain: yes
Morphology
cell morphology
- @ref: 31166
- gram stain: positive
- cell length: 0.45 µm
- cell width: 0.41 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 31166
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 31166 | positive | optimum | 27.5 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
| 67771 | positive | growth | 30 | mesophilic |
culture pH
- @ref: 31166
- ability: positive
- type: optimum
- pH: 6
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 31166 | aerobe |
| 67771 | aerobe |
spore formation
- @ref: 31166
- spore formation: no
halophily
- @ref: 31166
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-1.0 %
observation
| @ref | observation |
|---|---|
| 31166 | aggregates in clumps |
| 67770 | quinones: MK-8(H4) |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31166 | 18403 | L-arabitol | + | carbon source |
| 31166 | 17057 | cellobiose | + | carbon source |
| 31166 | 33984 | fucose | + | carbon source |
| 31166 | 17716 | lactose | + | carbon source |
| 31166 | 29864 | mannitol | + | carbon source |
| 31166 | 26546 | rhamnose | + | carbon source |
| 31166 | 17814 | salicin | + | carbon source |
| 31166 | 30911 | sorbitol | + | carbon source |
| 31166 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31166 | catalase | + | 1.11.1.6 |
| 31166 | gelatinase | + | |
| 31166 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 31166 | plant associated | |||||
| 67770 | Surface-sterilized roots of horse-weed (Conyza canadensis) | Conyza canadensis | Daejeon area | Republic of Korea | KOR | Asia |
| 67771 | From surface-sterilized roots of horse-weed (Conyza canadensis) | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Host
- Cat2: #Plants
taxonmaps
- @ref: 69479
- File name: preview.99_182785.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_1465;97_1747;98_14220;99_182785&stattab=map
- Last taxonomy: Nocardioides conyzicola
- 16S sequence: KC878445
- Sequence Identity:
- Total samples: 40
- soil counts: 19
- aquatic counts: 7
- animal counts: 10
- plant counts: 4
Sequence information
16S sequences
- @ref: 31166
- description: Nocardioides conyzicola strain HWE 2-02 16S ribosomal RNA gene, partial sequence
- accession: KC878445
- length: 1422
- database: nuccore
- NCBI tax ID: 1651781
GC content
| @ref | GC-content | method |
|---|---|---|
| 31166 | 68.47 | |
| 67770 | 68.47 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 31166
culture collection no.: KCTC 29121, JCM 18531, HWE 2-02
literature
- topic: Phylogeny
- Pubmed-ID: 23990649
- title: Nocardioides endophyticus sp. nov. and Nocardioides conyzicola sp. nov., isolated from herbaceous plant roots.
- authors: Han JH, Kim TS, Joung Y, Kim MN, Shin KS, Bae T, Kim SB
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.054619-0
- year: 2013
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Artemisia/microbiology, Bacterial Typing Techniques, Base Composition, Conyza/microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 31166 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27494 | 28776041 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |