Strain identifier

BacDive ID: 134065

Type strain: Yes

Species: Chryseobacterium angstadtii

Strain Designation: KM

Strain history: <- Jeffrey D Newman, ycoming College, USA

NCBI tax ID(s): 558151 (species)

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General

@ref: 31163

BacDive-ID: 134065

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Chryseobacterium angstadtii KM is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from built environment.

NCBI tax id

  • NCBI tax id: 558151
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Jeffrey D Newman, ycoming College, USA

doi: 10.13145/bacdive134065.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium angstadtii
  • full scientific name: Chryseobacterium angstadtii Kirk et al. 2013

@ref: 31163

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Chryseobacterium

species: Chryseobacterium angstadtii

strain designation: KM

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
31163negative2.5 µm0.5 µmrod-shapedno
67771rod-shapedno
67771negative

pigmentation

  • @ref: 31163
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31163positivegrowth20-30
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
31163positivegrowth5.5-8.5alkaliphile
31163positiveoptimum7.25

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31163aerobe
67771aerobe

spore formation

@refspore formation
31163no
67771no

halophily

  • @ref: 31163
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-2 %

observation

  • @ref: 67771
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3116330089acetate+carbon source
3116317128adipate+carbon source
3116335391aspartate+carbon source
3116316947citrate+carbon source
3116323652dextrin+carbon source
311635291gelatin+carbon source
3116317234glucose+carbon source
3116329987glutamate+carbon source
3116317754glycerol+carbon source
3116317306maltose+carbon source
3116337684mannose+carbon source
3116327082trehalose+carbon source
3116353423tween 40+carbon source
311634853esculin+hydrolysis

metabolite production

  • @ref: 31163
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 31163
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
31163acid phosphatase+3.1.3.2
31163alkaline phosphatase+3.1.3.1
31163alpha-galactosidase+3.2.1.22
31163catalase+1.11.1.6
31163gelatinase+
31163cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
31163built environment
67771From tank containing red-spotted newts, `Notophthalmus viridescens`WilliamsportUSAUSANorth America

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Built environment

taxonmaps

  • @ref: 69479
  • File name: preview.99_6998.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_76;96_206;97_225;98_5139;99_6998&stattab=map
  • Last taxonomy: Chryseobacterium angstadtii subclade
  • 16S sequence: EU999734
  • Sequence Identity:
  • Total samples: 25
  • soil counts: 1
  • animal counts: 3
  • plant counts: 21

Sequence information

16S sequences

  • @ref: 31163
  • description: Chryseobacterium angstadtii strain KM 16S ribosomal RNA gene, partial sequence
  • accession: EU999734
  • length: 1417
  • database: nuccore
  • NCBI tax ID: 558151

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Chryseobacterium angstadtii KMGCA_001045465contigncbi558151
66792Chryseobacterium angstadtii KM2645727576draftimg558151

GC content

  • @ref: 31163
  • GC-content: 38.1

External links

@ref: 31163

culture collection no.: ATCC BAA 2160, NRRL B-59516, KCTC 23297

literature

  • topic: Phylogeny
  • Pubmed-ID: 23996834
  • title: Chryseobacterium angstadtii sp. nov., isolated from a newt tank.
  • authors: Kirk KE, Hoffman JA, Smith KA, Strahan BL, Failor KC, Krebs JE, Gale AN, Do TD, Sontag TC, Batties AM, Mistiszyn K, Newman JD
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.054478-0
  • year: 2013
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, Chaperonin 60/genetics, Chryseobacterium/*classification/genetics/isolation & purification, DNA Gyrase/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, *Phylogeny, Polyenes/chemistry, RNA, Ribosomal, 16S/genetics, *Salamandridae, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31163Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172749128776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/