Strain identifier
BacDive ID: 134063
Type strain: 
Species: Chryseobacterium lactis
Strain Designation: A140/68, F68, CDCKC1864
NCBI tax ID(s): 1241981 (species)
version 8.1 (current version)
General
@ref: 31161
BacDive-ID: 134063
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Chryseobacterium lactis A140/68 is a Gram-negative bacterium that was isolated from food product.
NCBI tax id
- NCBI tax id: 1241981
- Matching level: species
doi: 10.13145/bacdive134063.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Weeksellaceae
- genus: Chryseobacterium
- species: Chryseobacterium lactis
- full scientific name: Chryseobacterium lactis Holmes et al. 2013
@ref: 31161
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Chryseobacterium
species: Chryseobacterium lactis
strain designation: A140/68, F68, CDCKC1864
type strain: yes
Morphology
cell morphology
- @ref: 31161
- gram stain: negative
- motility: no
pigmentation
- @ref: 31161
- production: yes
Culture and growth conditions
culture temp
- @ref: 31161
- growth: positive
- type: growth
- temperature: 18-37
Physiology and metabolism
observation
- @ref: 31161
- observation: aggregates in clumps
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31161 | 28757 | fructose | + | carbon source |
| 31161 | 17234 | glucose | + | carbon source |
| 31161 | 17754 | glycerol | + | carbon source |
| 31161 | 17306 | maltose | + | carbon source |
| 31161 | 27082 | trehalose | + | carbon source |
| 31161 | 4853 | esculin | + | hydrolysis |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31161 | catalase | + | 1.11.1.6 |
| 31161 | gelatinase | + | |
| 31161 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 31161
- sample type: food product
isolation source categories
- Cat1: #Engineered
- Cat2: #Food production
- Cat3: #Food
taxonmaps
- @ref: 69479
- File name: preview.99_17752.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_76;96_497;97_569;98_654;99_17752&stattab=map
- Last taxonomy: Weeksellaceae
- 16S sequence: JX100819
- Sequence Identity:
- Total samples: 953
- soil counts: 137
- aquatic counts: 207
- animal counts: 578
- plant counts: 31
Sequence information
16S sequences
- @ref: 31161
- description: Chryseobacterium haifense strain H5342 16S ribosomal RNA gene, partial sequence
- accession: JX100819
- length: 1439
- database: nuccore
- NCBI tax ID: 421525
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Chryseobacterium lactis NCTC11390 | GCA_002899875 | scaffold | ncbi | 1241981 |
| 66792 | Chryseobacterium lactis strain NCTC11390 | 1241981.3 | wgs | patric | 1241981 |
| 66792 | Chryseobacterium lactis NCTC 11390 | 2874367997 | draft | img | 1241981 |
GC content
- @ref: 31161
- GC-content: 34.5
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 94.517 | no |
| gram-positive | no | 97.915 | no |
| anaerobic | no | 99.591 | no |
| aerobic | yes | 92.682 | no |
| halophile | no | 94.737 | no |
| spore-forming | no | 92.696 | no |
| thermophile | no | 99.828 | no |
| glucose-util | yes | 85.959 | no |
| motile | no | 91.194 | no |
| glucose-ferment | no | 93.786 | no |
External links
@ref: 31161
culture collection no.: CCUG 60566, NCTC 11390
straininfo link
- @ref: 91690
- straininfo: 7037
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23934253 | DNA-DNA hybridization study of strains of Chryseobacterium, Elizabethkingia and Empedobacter and of other usually indole-producing non-fermenters of CDC groups IIc, IIe, IIh and IIi, mostly from human clinical sources, and proposals of Chryseobacterium bernardetii sp. nov., Chryseobacterium carnis sp. nov., Chryseobacterium lactis sp. nov., Chryseobacterium nakagawai sp. nov. and Chryseobacterium taklimakanense comb. nov. | Holmes B, Steigerwalt AG, Nicholson AC | Int J Syst Evol Microbiol | 10.1099/ijs.0.054353-0 | 2013 | Bacterial Typing Techniques, Chryseobacterium/*classification/genetics, DNA, Bacterial/genetics, Flavobacteriaceae/*classification/genetics, Humans, Indoles/metabolism, Molecular Sequence Data, *Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Pathogenicity |
| Phylogeny | 24958763 | Chryseobacterium artocarpi sp. nov., isolated from the rhizosphere soil of Artocarpus integer. | Venil CK, Nordin N, Zakaria ZA, Ahmad WA | Int J Syst Evol Microbiol | 10.1099/ijs.0.063594-0 | 2014 | Artocarpus/*microbiology, Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Malaysia, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Genetics | 29954917 | Draft Genome Sequences of Chryseobacterium lactis NCTC11390(T) Isolated from Milk, Chryseobacterium oncorhynchi 701B-08(T) from Rainbow Trout, and Chryseobacterium viscerum 687B-08(T) from Diseased Fish. | Jeong JJ, Lee YJ, Pathiraja D, Park B, Choi IG, Kim KD | Genome Announc | 10.1128/genomeA.00628-18 | 2018 | Phylogeny | |
| Phylogeny | 30372407 | Chryseobacterium phosphatilyticum sp. nov., a phosphate-solubilizing endophyte isolated from cucumber (Cucumis sativus L.) root. | Jeong JJ, Sang MK, Lee DW, Choi IG, Kim KD | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003091 | 2018 | Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/isolation & purification, Cucumis sativus/*microbiology, DNA, Bacterial/genetics, Endophytes/classification/isolation & purification, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phosphates, Phosphatidylethanolamines/chemistry, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Enzymology |
| Phylogeny | 34748473 | Chryseobacterium panacisoli sp. nov., isolated from ginseng-cultivation soil with ginsenoside-converting activity. | Keum DH, Yeon JM, Yun CS, Lee SY, Im WT | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005086 | 2021 | Bacterial Typing Techniques, Base Composition, *Chryseobacterium/classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Ginsenosides/metabolism, Glycolipids/chemistry, Nucleic Acid Hybridization, *Panax/microbiology, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 34878376 | Chryseobacterium lecithinasegens sp. nov., a siderophore-producing bacterium isolated from soil at the bottom of a pond. | Kutsuna R, Mashima I, Miyoshi-Akiyama T, Muramatsu Y, Tomida J, Kawamura Y | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005135 | 2021 | Bacterial Typing Techniques, Base Composition, *Chryseobacterium/classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Geologic Sediments/*microbiology, Japan, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Ponds/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Siderophores | Transcriptome |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 31161 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27489 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 91690 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID7037.1 |