Strain identifier

BacDive ID: 134060

Type strain: Yes

Species: Algibacter lectus

Strain Designation: WS-MY22

Strain history: <- JH Yoon, Sungkyunkwan Univ., Korea

NCBI tax ID(s): 221126 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.1 (current version):
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 9.1 (current version)

General

@ref: 31156

BacDive-ID: 134060

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Algibacter lectus WS-MY22 is an aerobe, Gram-negative, motile bacterium that was isolated from From brown algae, `Undaria pinnatifida'.

NCBI tax id

  • NCBI tax id: 221126
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- JH Yoon, Sungkyunkwan Univ., Korea

doi: 10.13145/bacdive134060.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Algibacter
  • species: Algibacter lectus
  • full scientific name: Algibacter lectus Nedashkovskaya et al. 2004

  • synonyms

    • @ref: 20215
    • synonym: Algibacter wandonensis

@ref: 31156

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Algibacter

species: Algibacter wandonensis

strain designation: WS-MY22

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangementconfidence
31156negative3.3 µm0.3 µmrod-shapedyesgliding
67771rod-shapedyesgliding
67771negative
69480no92
69480negative98.981

pigmentation

  • @ref: 31156
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperature
31156positivegrowth04-35
31156positiveoptimum25
67771positivegrowth25

culture pH

@refabilitytypepH
31156positivegrowth5.0-8.0
31156positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 90.442

halophily

@refsaltgrowthtested relationconcentration
31156NaClpositivegrowth0.5-6.0 %
31156NaClpositiveoptimum2 %

observation

@refobservation
31156aggregates in clumps
67771quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3115628260galactose+carbon source
3115617234glucose+carbon source
3115617992sucrose+carbon source
311564853esculin+hydrolysis

enzymes

@refvalueactivityec
31156acid phosphatase+3.1.3.2
31156alkaline phosphatase+3.1.3.1
31156catalase+1.11.1.6
31156gelatinase+
31156cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 67771
  • sample type: From brown algae, `Undaria pinnatifida'
  • geographic location: reservoir, Wando
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Built environment

taxonmaps

  • @ref: 69479
  • File name: preview.99_6788.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_107;96_3202;97_3930;98_5003;99_6788&stattab=map
  • Last taxonomy: Algibacter lectus
  • 16S sequence: KC987358
  • Sequence Identity:
  • Total samples: 429
  • soil counts: 20
  • aquatic counts: 252
  • animal counts: 156
  • plant counts: 1

Sequence information

16S sequences

  • @ref: 31156
  • description: Algibacter wandonensis 16S ribosomal RNA gene, partial sequence
  • accession: KC987358
  • length: 1443
  • database: nuccore
  • NCBI tax ID: 1343161

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Algibacter lectus CECT 8301GCA_004368925scaffoldncbi221126
66792Algibacter lectus KCTC 32381GCA_009807485contigncbi221126
66792Algibacter lectus WS-MY22GCA_009830375scaffoldncbi221126
66792Algibacter wandonensis strain CECT 83011343161.3wgspatric221126
66792Algibacter wandonensis strain KCTC 323811343161.5wgspatric221126
66792Algibacter wandonensis strain WS-MY221343161.6wgspatric221126
66792Algibacter wandonensis CECT 83012772190795draftimg1343161

GC content

  • @ref: 67771
  • GC-content: 35.8

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingno98.981yes
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.927yes
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes89.774no
69480spore-formingspore-formingAbility to form endo- or exosporesno90.442no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno98.5yes
69480flagellatedmotile2+Ability to perform flagellated movementno92yes

External links

@ref: 31156

culture collection no.: KCTC 32381, CECT 8301

straininfo link

  • @ref: 91687
  • straininfo: 391608

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23996835Algibacter wandonensis sp. nov., isolated from sediment around a brown algae (Undaria pinnatifida) reservoir.Yoon JH, Park SInt J Syst Evol Microbiol10.1099/ijs.0.053983-02013Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Undaria, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny25151138Spongiivirga citrea gen. nov., sp. nov., a new marine bacterium of the family Flavobacteriaceae isolated from a marine sponge.Yoon J, Adachi K, Kasai H, Lee MKCurr Microbiol10.1007/s00284-014-0682-92014Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/metabolism, Flavobacteriaceae/classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Seawater/*microbiologyMetabolism
Phylogeny32242795Algibacter pacificus sp. nov., isolated from a deep-sea seamount.Liu J, Cai SD, Wang YJ, Wang Q, Zhang DCInt J Syst Evol Microbiol10.1099/ijsem.0.0041192020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Nucleic Acid Hybridization, Pacific Ocean, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny33527165Reclassification of Algibacter wandonensis as a Later Heterotypic Synonym of Algibacter lectus Based on Whole-Genome Sequence Analysis.Liu A, Wang H, Yang YY, Xue QJ, Li XZCurr Microbiol10.1007/s00284-021-02356-52021Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, *Flavobacteriaceae/genetics, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31156Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172748428776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
91687Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID391608.1