Strain identifier
BacDive ID: 134056
Type strain: 
Species: Sphingobacterium changzhouense
Strain Designation: N7
NCBI tax ID(s): 1324946 (species)
version 8.1 (current version)
General
@ref: 31149
BacDive-ID: 134056
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Sphingobacterium changzhouense N7 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1324946
- Matching level: species
doi: 10.13145/bacdive134056.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Sphingobacteriia
- order: Sphingobacteriales
- family: Sphingobacteriaceae
- genus: Sphingobacterium
- species: Sphingobacterium changzhouense
- full scientific name: Sphingobacterium changzhouense Liu et al. 2013
@ref: 31149
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Sphingobacterium
species: Sphingobacterium changzhouense
strain designation: N7
type strain: yes
Morphology
cell morphology
- @ref: 31149
- gram stain: negative
- cell length: 1.75 µm
- cell width: 0.7 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 31149
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 31149 | positive | growth | 10-40 | |
| 31149 | positive | optimum | 27.5 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 31149 | positive | growth | 5.0-10.0 | alkaliphile |
| 31149 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 31149
- oxygen tolerance: aerobe
spore formation
- @ref: 31149
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31149 | NaCl | positive | growth | 0-5 % |
| 31149 | NaCl | positive | optimum | 1 % |
observation
- @ref: 31149
- observation: aggregates in clumps
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31149 | 17234 | glucose | + | carbon source |
| 31149 | 17306 | maltose | + | carbon source |
| 31149 | 37684 | mannose | + | carbon source |
| 31149 | 28053 | melibiose | + | carbon source |
| 31149 | 506227 | N-acetylglucosamine | + | carbon source |
| 31149 | 17992 | sucrose | + | carbon source |
| 31149 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31149 | catalase | + | 1.11.1.6 |
| 31149 | cytochrome oxidase | + | 1.9.3.1 |
| 31149 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
- @ref: 31149
- sample type: soil
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_28506.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15366;96_911;97_1061;98_21309;99_28506&stattab=map
- Last taxonomy: Sphingobacterium changzhouense subclade
- 16S sequence: KC843944
- Sequence Identity:
- Total samples: 479
- soil counts: 44
- aquatic counts: 28
- animal counts: 365
- plant counts: 42
Sequence information
16S sequences
- @ref: 31149
- description: Sphingobacterium changzhouense strain N7 16S ribosomal RNA gene, partial sequence
- accession: KC843944
- length: 1489
- database: nuccore
- NCBI tax ID: 1324946
GC content
- @ref: 31149
- GC-content: 40.9
External links
@ref: 31149
culture collection no.: CCTCC AB 2012100, KACC 16854
literature
- topic: Phylogeny
- Pubmed-ID: 23859944
- title: Sphingobacterium changzhouense sp. nov., a bacterium isolated from a rice field.
- authors: Liu H, Zhang J, Chen D, Cao L, Lu P, Wu Z, Yang F, Li S, Hong Q
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.053603-0
- year: 2013
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Oryza/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Sphingobacterium/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 31149 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27477 | 28776041 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |