Strain identifier
BacDive ID: 134052
Type strain: 
Species: Algimonas ampicilliniresistens
Strain Designation: 14A-2-7
NCBI tax ID(s): 1298735 (species)
version 8.1 (current version)
General
@ref: 31144
BacDive-ID: 134052
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Algimonas ampicilliniresistens 14A-2-7 is an aerobe, Gram-negative, motile bacterium that was isolated from plant associated.
NCBI tax id
- NCBI tax id: 1298735
- Matching level: species
doi: 10.13145/bacdive134052.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Caulobacterales
- family: Hyphomonadaceae
- genus: Algimonas
- species: Algimonas ampicilliniresistens
- full scientific name: Algimonas ampicilliniresistens Fukui et al. 2013
@ref: 31144
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Caulobacterales
family: Hyphomonadaceae
genus: Algimonas
species: Algimonas ampicilliniresistens
strain designation: 14A-2-7
type strain: yes
Morphology
cell morphology
- @ref: 31144
- gram stain: negative
- cell length: 2.13 µm
- cell width: 0.38 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 31144
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 31144 | positive | growth | 10-30 | |
| 31144 | positive | optimum | 20 | psychrophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 31144 | positive | growth | 6.0-9.0 | alkaliphile |
| 31144 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 31144
- oxygen tolerance: aerobe
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31144 | NaCl | positive | growth | 01-05 % |
| 31144 | NaCl | positive | optimum | 3 % |
observation
- @ref: 31144
- observation: aggregates in clumps
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31144 | 17057 | cellobiose | + | carbon source |
| 31144 | 28260 | galactose | + | carbon source |
| 31144 | 17234 | glucose | + | carbon source |
| 31144 | 17716 | lactose | + | carbon source |
| 31144 | 17306 | maltose | + | carbon source |
| 31144 | 18222 | xylose | + | carbon source |
| 31144 | 4853 | esculin | + | hydrolysis |
| 31144 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31144 | acid phosphatase | + | 3.1.3.2 |
| 31144 | alkaline phosphatase | + | 3.1.3.1 |
| 31144 | catalase | + | 1.11.1.6 |
Isolation, sampling and environmental information
isolation
- @ref: 31144
- sample type: plant associated
isolation source categories
- Cat1: #Host
- Cat2: #Plants
taxonmaps
- @ref: 69479
- File name: preview.99_27206.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_521;96_12090;97_14658;98_20382;99_27206&stattab=map
- Last taxonomy: Algimonas ampicilliniresistens
- 16S sequence: AB795010
- Sequence Identity:
- Total samples: 570
- soil counts: 3
- aquatic counts: 553
- animal counts: 12
- plant counts: 2
Sequence information
16S sequences
- @ref: 31144
- description: Algimonas ampicilliniresistens gene for 16S ribosomal RNA, partial sequence, strain: 14A-2-7
- accession: AB795010
- length: 1351
- database: nuccore
- NCBI tax ID: 1298735
GC content
- @ref: 31144
- GC-content: 54.9
External links
@ref: 31144
culture collection no.: LMG 26421, NBRC 108219
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23852154 | Algimonas ampicilliniresistens sp. nov., isolated from the red alga Porphyra yezoensis, and emended description of the genus Algimonas. | Fukui Y, Kobayashi M, Saito H, Oikawa H, Yano Y, Satomi M | Int J Syst Evol Microbiol | 10.1099/ijs.0.053405-0 | 2013 | Alphaproteobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Porphyra/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry | Genetics |
| Phylogeny | 26296764 | Algimonas arctica sp. nov., isolated from intertidal sand, and emended description of the genus Algimonas. | Liu C, Zhang XY, Song XY, Su HN, Qin QL, Xie BB, Chen XL, Zhang YZ, Shi M | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000402 | 2015 | Alphaproteobacteria/*classification/genetics/isolation & purification, Arctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry | Genetics |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 31144 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27472 | 28776041 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |