Strain identifier

BacDive ID: 134032

Type strain: Yes

Species: Chryseobacterium gwangjuense

Strain Designation: THG-A18

NCBI tax ID(s): 1069980 (species)

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General

@ref: 31099

BacDive-ID: 134032

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Chryseobacterium gwangjuense THG-A18 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1069980
  • Matching level: species

doi: 10.13145/bacdive134032.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium gwangjuense
  • full scientific name: Chryseobacterium gwangjuense Park et al. 2013

@ref: 31099

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Chryseobacterium

species: Chryseobacterium gwangjuense

strain designation: THG-A18

type strain: yes

Morphology

cell morphology

  • @ref: 31099
  • gram stain: negative
  • cell length: 1.7 µm
  • cell width: 0.75 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 31099
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31099positivegrowth4.0-35
31099positiveoptimum27.5mesophilic

culture pH

@refabilitytypepHPH range
31099positivegrowth6.0-10.0alkaliphile
31099positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 31099
  • oxygen tolerance: aerobe

halophily

  • @ref: 31099
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
31099168082-dehydro-D-gluconate+carbon source
3109916947citrate+carbon source
3109917234glucose+carbon source
3109917306maltose+carbon source
3109926271proline+carbon source
310994853esculin+hydrolysis

metabolite production

  • @ref: 31099
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

enzymes

@refvalueactivityec
31099acid phosphatase+3.1.3.2
31099alkaline phosphatase+3.1.3.1
31099catalase+1.11.1.6
31099gelatinase+
31099cytochrome oxidase+1.9.3.1
31099urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 31099
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Sequence information

16S sequences

  • @ref: 31099
  • description: Chryseobacterium gwangjuense strain THG-A18 16S ribosomal RNA gene, partial sequence
  • accession: JN196134
  • length: 1420
  • database: nuccore
  • NCBI tax ID: 1069980

Genome sequences

  • @ref: 66792
  • description: Chryseobacterium gwangjuense THG-A18
  • accession: GCA_021311115
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 1069980

GC content

  • @ref: 31099
  • GC-content: 36.4

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno96.19yes
gram-positiveno98.105no
anaerobicno99.222yes
aerobicyes89.817no
halophileno97.189no
spore-formingno95.192no
motileno90.513yes
glucose-fermentno93.828no
thermophileno99.658yes
glucose-utilyes83.98yes

External links

@ref: 31099

culture collection no.: KACC 16227, LMG 26579

straininfo link

  • @ref: 91677
  • straininfo: 377928

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23907230Chryseobacterium gwangjuense sp. nov., isolated from soil.Park YJ, Son HM, Lee EH, Kim JH, Mavlonov GT, Choi KJ, Shin HS, Kook M, Yi THInt J Syst Evol Microbiol10.1099/ijs.0.052118-02013Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ginsenosides/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny35440770Chryseobacterium tagetis sp. nov., a plant growth promoting bacterium with an antimicrobial activity isolated from the roots of medicinal plant (Tagetes patula).Chhetri G, Kim I, Kim J, So Y, Seo TJ Antibiot (Tokyo)10.1038/s41429-022-00525-72022*Anti-Infective Agents, Bacterial Typing Techniques, *Chryseobacterium/genetics, DNA, Bacterial/genetics, Fatty Acids, Nucleic Acid Hybridization, Phylogeny, *Plants, Medicinal/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Tagetes/genetics, Vitamin K 2Transcriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31099Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172742828776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
91677Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID377928.1