Strain identifier
BacDive ID: 134026
Type strain: 
Species: Taibaiella smilacinae
Strain Designation: PTJT-5
Strain history: <- L Zhang,Northwest A&F Univ., China
NCBI tax ID(s): 1303085 (species)
version 8.1 (current version)
General
@ref: 31083
BacDive-ID: 134026
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Taibaiella smilacinae PTJT-5 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from plant associated.
NCBI tax id
- NCBI tax id: 1303085
- Matching level: species
strain history
- @ref: 67771
- history: <- L Zhang,Northwest A&F Univ., China
doi: 10.13145/bacdive134026.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Chitinophagia
- order: Chitinophagales
- family: Chitinophagaceae
- genus: Taibaiella
- species: Taibaiella smilacinae
- full scientific name: Taibaiella smilacinae Zhang et al. 2013
@ref: 31083
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Chitinophagales
family: Chitinophagaceae
genus: Taibaiella
species: Taibaiella smilacinae
strain designation: PTJT-5
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility |
|---|---|---|---|---|---|
| 31083 | negative | 1.9 µm | 0.5 µm | rod-shaped | no |
| 67771 | rod-shaped | ||||
| 67771 | negative |
pigmentation
- @ref: 31083
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 31083 | positive | growth | 07-33 | |
| 31083 | positive | optimum | 26.5 | mesophilic |
| 67771 | positive | growth | 25-28 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 31083 | positive | growth | 5.0-9.0 | alkaliphile |
| 31083 | positive | optimum | 6.5 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 31083 | aerobe |
| 67771 | aerobe |
halophily
- @ref: 31083
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-1.0 %
observation
| @ref | observation |
|---|---|
| 31083 | aggregates in clumps |
| 67771 | quinones: MK-7 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31083 | 22599 | arabinose | + | carbon source |
| 31083 | 16947 | citrate | + | carbon source |
| 31083 | 24265 | gluconate | + | carbon source |
| 31083 | 17234 | glucose | + | carbon source |
| 31083 | 25115 | malate | + | carbon source |
| 31083 | 29864 | mannitol | + | carbon source |
| 31083 | 37684 | mannose | + | carbon source |
| 31083 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31083 | acid phosphatase | + | 3.1.3.2 |
| 31083 | alkaline phosphatase | + | 3.1.3.1 |
| 31083 | alpha-galactosidase | + | 3.2.1.22 |
| 31083 | catalase | + | 1.11.1.6 |
| 31083 | gelatinase | + | |
| 31083 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 31083 | plant associated | ||||||
| 67771 | From surface-sterilized stem of 'Smilacina japonica` A. Gray | Taibai Mountain, Shaanxi Province | China | CHN | Asia | 33.95 | 107.75 |
isolation source categories
- Cat1: #Host
- Cat2: #Plants
Sequence information
16S sequences
- @ref: 31083
- description: Taibaiella smilacinae strain PTJT-5 16S ribosomal RNA gene, partial sequence
- accession: KC571459
- length: 1397
- database: nuccore
- NCBI tax ID: 1303085
GC content
- @ref: 31083
- GC-content: 40.3
External links
@ref: 31083
culture collection no.: CCTCC AB 2013017, KCTC 32316
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23645023 | Taibaiella smilacinae gen. nov., sp. nov., an endophytic member of the family Chitinophagaceae isolated from the stem of Smilacina japonica, and emended description of Flavihumibacter petaseus. | Zhang L, Wang Y, Wei L, Wang Y, Shen X, Li S | Int J Syst Evol Microbiol | 10.1099/ijs.0.051607-0 | 2013 | Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Maianthemum/*microbiology, Molecular Sequence Data, Phosphatidylethanolamines/analysis, *Phylogeny, Plant Stems/microbiology, Polyenes/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/analysis, Vitamin K 2/analogs & derivatives/analysis | Genetics |
| Phylogeny | 24425827 | Taibaiella koreensis sp. nov., isolated from soil of a ginseng field. | Son HM, Kook M, Kim JH, Yi TH | Int J Syst Evol Microbiol | 10.1099/ijs.0.059790-0 | 2013 | Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Panax/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/chemistry, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 24556635 | Taibaiella chishuiensis sp. nov., isolated from freshwater. | Tan X, Zhang RG, Meng TY, Liang HZ, Lv J | Int J Syst Evol Microbiol | 10.1099/ijs.0.060269-0 | 2014 | Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/*microbiology, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, Polyenes/chemistry, RNA, Ribosomal, 16S/genetics, Rivers/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 26071003 | Taibaiella yonginensis sp. nov., a bacterium isolated from soil of Yongin city. | Singh H, Du J, Won K, Yang JE, Akter S, Kim KY, Yin C, Yi TH | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0505-4 | 2015 | Aerobiosis, Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/*isolation & purification/physiology, Base Composition, Cities, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Pigments, Biological, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Spermidine/analysis, Temperature | Genetics |
| Phylogeny | 34008100 | Taibaiella lutea sp. nov., Isolated from Ubiquitous Weedy Grass. | Chhetri G, Kim I, Kim J, Kang M, Seo T | Curr Microbiol | 10.1007/s00284-021-02518-5 | 2021 | Bacterial Typing Techniques, Bacteroidetes, DNA, Bacterial/genetics, Fatty Acids/analysis, Humans, Phylogeny, *Poaceae, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2 | Pathogenicity |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 31083 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27412 | 28776041 |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc |