Strain identifier

BacDive ID: 134025

Type strain: Yes

Species: Mycobacterium paragordonae

Strain Designation: 49061

Culture col. no.: JCM 18565, KCTC 29126T

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 5.0 (current version):
version 4.1:
version 4.0:
version 3.0:
version 2.1:
version 5.0 (current version)

General

@ref: 31080

BacDive-ID: 134025

keywords: mesophilic, Bacteria, 16S sequence, genome sequence, rod-shaped

description: Mycobacterium paragordonae 49061 is a mesophilic, rod-shaped bacterium that was isolated from human - mouth.

doi: 10.13145/bacdive134025.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium paragordonae
  • full scientific name: Mycobacterium paragordonae Kim et al. 2014

@ref: 31080

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium paragordonae

strain designation: 49061

type strain: yes

Morphology

cell morphology

  • @ref: 31080
  • cell shape: rod-shaped

pigmentation

  • @ref: 31080
  • production: yes

Culture and growth conditions

culture temp

  • @ref: 31080
  • growth: positive
  • type: growth
  • temperature: 25-30
  • range: mesophilic

Physiology and metabolism

metabolite utilization

  • @ref: 31080
  • Chebi-ID: 53426
  • metabolite: tween 80
  • utilization activity: +
  • kind of utilization tested: carbon source

enzymes

@refvalueactivityec
31080arylsulfatase+3.1.6.1
31080catalase+1.11.1.6
31080urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 31080
  • sample type: human - mouth

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways#Mouth

Sequence information

16S sequences

  • @ref: 31080
  • description: Mycobacterium paragordonae strain 49061 16S ribosomal RNA gene, partial sequence
  • accession: KC525204
  • length: 1393
  • database: nuccore
  • NCBI tax ID: 1389713

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycobacterium paragordonae 49061GCA_003614435completencbi1389713
66792Mycobacterium paragordonae JCM 18565GCA_010723415scaffoldncbi1389713
66792Mycobacterium paragordonae 35AIIIGCA_004359025scaffoldncbi1389713
66792Mycobacterium paragordonae 29AIIIGCA_004359015scaffoldncbi1389713
66792Mycobacterium paragordonae 10AIIIGCA_004359035scaffoldncbi1389713
66792Mycobacterium paragordonae IBE200GCA_009733755contigncbi1389713
66792Mycobacterium paragordonae strain 10AIII1389713.11wgspatric1389713
66792Mycobacterium paragordonae strain 29AIII1389713.9wgspatric1389713
66792Mycobacterium paragordonae strain 35AIII1389713.10wgspatric1389713
66792Mycobacterium paragordonae strain 490611389713.6completepatric1389713
66792Mycobacterium paragordonae strain IBE2001389713.12wgspatric1389713

External links

@ref: 31080

culture collection no.: JCM 18565, KCTC 29126T

straininfo link

@refpassport
20218http://www.straininfo.net/strains/892704
20218http://www.straininfo.net/strains/892705

Reference

@idauthorstitledoi/urljournalpubmedID_cross_reference
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
2740910.1099/ijs.0.051540-0
31080Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-1727409
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes