Strain identifier

BacDive ID: 134020

Type strain: Yes

Species: Algibacter agarivorans

Strain Designation: KYW560

Culture col. no.: KCTC 23855, JCM 18285

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General

@ref: 31072

BacDive-ID: 134020

keywords: rod-shaped, gram-negative, aerobe, Bacteria, 16S sequence

description: Algibacter agarivorans KYW560 is an aerobe, gram-negative, rod-shaped bacterium that was isolated from seawater.

doi: 10.13145/bacdive134020.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidetes
  • domain: Bacteria
  • phylum: Bacteroidetes
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Algibacter
  • species: Algibacter agarivorans
  • full scientific name: Algibacter agarivorans Park et al. 2013

@ref: 31072

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Algibacter

species: Algibacter agarivorans

strain designation: KYW560

type strain: yes

Morphology

cell morphology

  • @ref: 31072
  • gram stain: negative
  • cell length: 2.1 µm
  • cell width: 0.35 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 31072
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31072positivegrowth10-28
31072positiveoptimum25mesophilic

culture pH

@refabilitytypepH
31072positivegrowth06-11
31072positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 31072
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
31072NaClpositivegrowth01-03 %
31072NaClpositiveoptimum2 %

observation

  • @ref: 31072
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
310724853esculin+hydrolysis
3107217632nitrate+reduction

enzymes

@refvalueactivityec
31072acid phosphatase+3.1.3.2
31072alkaline phosphatase+3.1.3.1
31072catalase+1.11.1.6
31072cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 31072
  • sample type: seawater

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Sequence information

16S sequences

  • @ref: 31072
  • description: Algibacter agarivorans strain KYW560 16S ribosomal RNA gene, partial sequence
  • accession: JN864025
  • length: 1452
  • database: nuccore
  • NCBI tax ID: 1109741

GC content

  • @ref: 31072
  • GC-content: 41

External links

@ref: 31072

culture collection no.: KCTC 23855, JCM 18285

straininfo link

@refpassport
20218http://www.straininfo.net/strains/891049
20218http://www.straininfo.net/strains/891050

Reference

@idauthorstitledoi/urljournalpubmedID_cross_reference
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
2740110.1099/ijs.0.051300-0
31072Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-1727401