Strain identifier

BacDive ID: 134020

Type strain: Yes

Species: Algibacter agarivorans

Strain Designation: KYW560

Strain history: <- CN Seong, Sunchon Natl. Univ.

NCBI tax ID(s): 1109741 (species)

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General

@ref: 31072

BacDive-ID: 134020

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Algibacter agarivorans KYW560 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 1109741
  • Matching level: species

strain history

@refhistory
67770C. N. Seong KYW560.
67771<- CN Seong, Sunchon Natl. Univ.

doi: 10.13145/bacdive134020.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Algibacter
  • species: Algibacter agarivorans
  • full scientific name: Algibacter agarivorans Park et al. 2013

@ref: 31072

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Algibacter

species: Algibacter agarivorans

strain designation: KYW560

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
31072negative2.1 µm0.35 µmrod-shapedno
67771rod-shapedno
67771negative

pigmentation

  • @ref: 31072
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31072positivegrowth10-28
31072positiveoptimum25mesophilic
67770positivegrowth25mesophilic
67771positivegrowth25mesophilic

culture pH

@refabilitytypepHPH range
31072positivegrowth06-11alkaliphile
31072positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31072aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
31072NaClpositivegrowth01-03 %
31072NaClpositiveoptimum2 %

observation

@refobservation
31072aggregates in clumps
67771quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
310724853esculin+hydrolysis
3107217632nitrate+reduction

enzymes

@refvalueactivityec
31072acid phosphatase+3.1.3.2
31072alkaline phosphatase+3.1.3.1
31072catalase+1.11.1.6
31072cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentlatitudelongitudegeographic location
31072seawater
67770Seawater from Gwangyang Bay,(34° 51' N 127° 47' E)Republic of KoreaKORAsia34.85127.783
67771From seawaterRepublic of KoreaKORAsia34.8833127.767Gwangyang Bay

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_33513.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_107;96_4759;97_12553;98_24800;99_33513&stattab=map
  • Last taxonomy: Algibacter agarivorans subclade
  • 16S sequence: JN864025
  • Sequence Identity:
  • Total samples: 12
  • soil counts: 1
  • aquatic counts: 10
  • animal counts: 1

Sequence information

16S sequences

  • @ref: 31072
  • description: Algibacter agarivorans strain KYW560 16S ribosomal RNA gene, partial sequence
  • accession: JN864025
  • length: 1452
  • database: nuccore
  • NCBI tax ID: 1109741

GC content

@refGC-content
3107241
6777140.3-41.7

External links

@ref: 31072

culture collection no.: KCTC 23855, JCM 18285

literature

  • topic: Phylogeny
  • Pubmed-ID: 23543504
  • title: Algibacter agarivorans sp. nov. and Algibacter agarilyticus sp. nov., isolated from seawater, reclassification of Marinivirga aestuarii as Algibacter aestuarii comb. nov. and emended description of the genus Algibacter.
  • authors: Park SC, Hwang YM, Lee JH, Baik KS, Seong CN
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.051300-0
  • year: 2013
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/analysis, *Phylogeny, Polyenes/analysis, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis, Water Microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31072Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172740128776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/