Strain identifier

BacDive ID: 134013

Type strain: Yes

Species: Azospirillum fermentarium

Strain Designation: CC-LY743

Strain history: C.-C. Young, Natl. Chung Hsing Univ., Taiwan; CC-LY743.

NCBI tax ID(s): 1233114 (species)

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General

@ref: 31056

BacDive-ID: 134013

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, spiral-shaped

description: Azospirillum fermentarium CC-LY743 is an aerobe, Gram-negative, motile bacterium that was isolated from built environment.

NCBI tax id

  • NCBI tax id: 1233114
  • Matching level: species

strain history

  • @ref: 67770
  • history: C.-C. Young, Natl. Chung Hsing Univ., Taiwan; CC-LY743.

doi: 10.13145/bacdive134013.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Azospirillaceae
  • genus: Azospirillum
  • species: Azospirillum fermentarium
  • full scientific name: Azospirillum fermentarium Lin et al. 2013

@ref: 31056

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Rhodospirillaceae

genus: Azospirillum

species: Azospirillum fermentarium

strain designation: CC-LY743

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31056negative2.5 µm1.1 µmspiral-shapedyes
125439negative97.3

pigmentation

  • @ref: 31056
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperature
31056positivegrowth20-37
31056positiveoptimum30
67770positivegrowth30

culture pH

@refabilitytypepH
31056positivegrowth6.0-8.0
31056positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
31056aerobe
125439obligate aerobe95.9

spore formation

@refspore formationconfidence
31056no
125439no95.7

halophily

  • @ref: 31056
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-3 %

observation

@refobservation
31056aggregates in clumps
67770quinones: Q-10

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3105616000ethanolamine+carbon source
31056620642,3-butanediol+carbon source
3105630089acetate+carbon source
3105617126DL-carnitine+carbon source
3105615740formate+carbon source
3105633984fucose+carbon source
3105624148galactonate+carbon source
3105628260galactose+carbon source
3105624265gluconate+carbon source
310565417glucosamine+carbon source
3105632323glucuronamide+carbon source
3105629987glutamate+carbon source
3105617240itaconate+carbon source
3105617306maltose+carbon source
3105617268myo-inositol+carbon source
3105651850methyl pyruvate+carbon source
3105626546rhamnose+carbon source
3105630911sorbitol+carbon source
3105630031succinate+carbon source
3105617992sucrose+carbon source
3105627082trehalose+carbon source
3105653423tween 40+carbon source
3105616704uridine+carbon source
3105617632nitrate+reduction

enzymes

@refvalueactivityec
31056acid phosphatase+3.1.3.2
31056alkaline phosphatase+3.1.3.1
31056catalase+1.11.1.6
31056cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
31056built environment
67770Fermentative tankTaiwan, Province of ChinaTWNAsia

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Built environment

taxonmaps

  • @ref: 69479
  • File name: preview.99_59062.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_47;96_12508;97_15185;98_42006;99_59062&stattab=map
  • Last taxonomy: Azospirillum fermentarium subclade
  • 16S sequence: JX843282
  • Sequence Identity:
  • Total samples: 163
  • soil counts: 31
  • aquatic counts: 78
  • animal counts: 31
  • plant counts: 23

Sequence information

16S sequences

  • @ref: 31056
  • description: Azospirillum fermentarium strain CC-LY743 16S ribosomal RNA gene, partial sequence
  • accession: JX843282
  • length: 1448
  • database: nuccore
  • NCBI tax ID: 1233114

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Azospirillum fermentarium CC-LY7432928835693draftimg191
66792Azospirillum fermentarium CC-LY743GCA_025961205contigncbi1233114

GC content

@refGC-contentmethod
3105669.6
6777069.5-69.7high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidence
125439BacteriaNetspore_formationAbility to form endo- or exosporesno95.7
125439BacteriaNetmotilityAbility to perform movementyes68.3
125439BacteriaNetgram_stainReaction to gram-stainingnegative97.3
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe95.9

External links

@ref: 31056

culture collection no.: BCRC 80505, JCM 18688, LMG 27264

straininfo link

  • @ref: 91668
  • straininfo: 382175

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23645021Azospirillum fermentarium sp. nov., a nitrogen-fixing species isolated from a fermenter.Lin SY, Liu YC, Hameed A, Hsu YH, Lai WA, Shen FT, Young CCInt J Syst Evol Microbiol10.1099/ijs.0.050872-02013Azospirillum/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Bioreactors/*microbiology, DNA, Bacterial/genetics, Fatty Acids/analysis, *Fermentation, Molecular Sequence Data, Nitrogen Fixation, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Taiwan, Ubiquinone/analysisGenetics
29929051Structure of the O-specific polysaccharide from Azospirillum fermentarium CC-LY743(T).Sigida EN, Fedonenko YP, Shashkov AS, Konnova SA, Ignatov VVCarbohydr Res10.1016/j.carres.2018.06.0032018Azospirillum/*chemistry, Carbohydrate Conformation, Nuclear Magnetic Resonance, Biomolecular, Polysaccharides, Bacterial/*chemistry

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31056Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172738628776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91668Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID382175.1
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG