Strain identifier

BacDive ID: 134002

Type strain: Yes

Species: Mucilaginibacter gynuensis

Strain Designation: YC7003

Strain history: Y. R. Chung YC7003.

NCBI tax ID(s): 1302236 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 31032

BacDive-ID: 134002

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Mucilaginibacter gynuensis YC7003 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from plant associated.

NCBI tax id

  • NCBI tax id: 1302236
  • Matching level: species

strain history

  • @ref: 67770
  • history: Y. R. Chung YC7003.

doi: 10.13145/bacdive134002.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Sphingobacteriia
  • order: Sphingobacteriales
  • family: Sphingobacteriaceae
  • genus: Mucilaginibacter
  • species: Mucilaginibacter gynuensis
  • full scientific name: Mucilaginibacter gynuensis Khan et al. 2013

@ref: 31032

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Sphingobacteriales

family: Sphingobacteriaceae

genus: Mucilaginibacter

species: Mucilaginibacter gynuensis

strain designation: YC7003

type strain: yes

Morphology

cell morphology

  • @ref: 31032
  • gram stain: negative
  • cell length: 1.6 µm
  • cell width: 0.46 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 31032
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31032positivegrowth04-35
31032positiveoptimum30mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
31032positivegrowth5.0-10.0alkaliphile
31032positiveoptimum6.5

Physiology and metabolism

oxygen tolerance

  • @ref: 31032
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31032
  • spore formation: no

halophily

  • @ref: 31032
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-1 %

observation

  • @ref: 31032
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3103221217L-alaninamide+carbon source
3103216449alanine+carbon source
3103222599arabinose+carbon source
3103228757fructose+carbon source
3103228260galactose+carbon source
3103217234glucose+carbon source
3103229987glutamate+carbon source
3103215428glycine+carbon source
3103217306maltose+carbon source
3103237684mannose+carbon source
31032506227N-acetylglucosamine+carbon source
3103226271proline+carbon source
3103217822serine+carbon source
3103217992sucrose+carbon source
3103226986threonine+carbon source
3103227082trehalose+carbon source
310324853esculin+hydrolysis

enzymes

@refvalueactivityec
31032alkaline phosphatase+3.1.3.1
31032alpha-galactosidase+3.2.1.22

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
31032plant associated
67770Piece of rotten wood collected at the campus of Gyeongsang National UniversityJinjuRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants

Sequence information

16S sequences

  • @ref: 31032
  • description: Mucilaginibacter gynuensis strain YC7003 16S ribosomal RNA gene, partial sequence
  • accession: KC247157
  • length: 1483
  • database: nuccore
  • NCBI tax ID: 1302236

GC content

  • @ref: 31032
  • GC-content: 49

External links

@ref: 31032

culture collection no.: KACC 15532, JCM 17705

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23475339Mucilaginibacter gynuensis sp. nov., isolated from rotten wood.Khan H, Chung EJ, Jeon CO, Chung YRInt J Syst Evol Microbiol10.1099/ijs.0.050153-02013Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis, Wood/*microbiologyGenetics
Phylogeny27412244Mucilaginibacter pedocola sp. nov., isolated from a heavy-metal-contaminated paddy field.Tang J, Huang J, Qiao Z, Wang R, Wang GInt J Syst Evol Microbiol10.1099/ijsem.0.0013062016Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Metals, Heavy, *Oryza, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny31515591Mucilaginibacter hurinus sp. nov., isolated from briquette warehouse soil.Choi L, Zhao X, Song Y, Wu M, Wang G, Li MArch Microbiol10.1007/s00203-019-01720-12019Bacterial Typing Techniques, Bacteroidetes/chemistry/*classification/genetics, Base Composition, DNA, Bacterial/genetics, Lipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Species SpecificityTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31032Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172736228776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/