Strain identifier
BacDive ID: 134002
Type strain:
Species: Mucilaginibacter gynuensis
Strain Designation: YC7003
Strain history: Y. R. Chung YC7003.
NCBI tax ID(s): 1302236 (species)
version 8.1 (current version)
General
@ref: 31032
BacDive-ID: 134002
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Mucilaginibacter gynuensis YC7003 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from plant associated.
NCBI tax id
- NCBI tax id: 1302236
- Matching level: species
strain history
- @ref: 67770
- history: Y. R. Chung YC7003.
doi: 10.13145/bacdive134002.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Sphingobacteriia
- order: Sphingobacteriales
- family: Sphingobacteriaceae
- genus: Mucilaginibacter
- species: Mucilaginibacter gynuensis
- full scientific name: Mucilaginibacter gynuensis Khan et al. 2013
@ref: 31032
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Mucilaginibacter
species: Mucilaginibacter gynuensis
strain designation: YC7003
type strain: yes
Morphology
cell morphology
- @ref: 31032
- gram stain: negative
- cell length: 1.6 µm
- cell width: 0.46 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 31032
- production: yes
Culture and growth conditions
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
31032 | positive | growth | 04-35 | |
31032 | positive | optimum | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
31032 | positive | growth | 5.0-10.0 | alkaliphile |
31032 | positive | optimum | 6.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 31032
- oxygen tolerance: aerobe
spore formation
- @ref: 31032
- spore formation: no
halophily
- @ref: 31032
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-1 %
observation
- @ref: 31032
- observation: aggregates in clumps
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31032 | 21217 | L-alaninamide | + | carbon source |
31032 | 16449 | alanine | + | carbon source |
31032 | 22599 | arabinose | + | carbon source |
31032 | 28757 | fructose | + | carbon source |
31032 | 28260 | galactose | + | carbon source |
31032 | 17234 | glucose | + | carbon source |
31032 | 29987 | glutamate | + | carbon source |
31032 | 15428 | glycine | + | carbon source |
31032 | 17306 | maltose | + | carbon source |
31032 | 37684 | mannose | + | carbon source |
31032 | 506227 | N-acetylglucosamine | + | carbon source |
31032 | 26271 | proline | + | carbon source |
31032 | 17822 | serine | + | carbon source |
31032 | 17992 | sucrose | + | carbon source |
31032 | 26986 | threonine | + | carbon source |
31032 | 27082 | trehalose | + | carbon source |
31032 | 4853 | esculin | + | hydrolysis |
enzymes
@ref | value | activity | ec |
---|---|---|---|
31032 | alkaline phosphatase | + | 3.1.3.1 |
31032 | alpha-galactosidase | + | 3.2.1.22 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
31032 | plant associated | ||||
67770 | Piece of rotten wood collected at the campus of Gyeongsang National University | Jinju | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Host
- Cat2: #Plants
Sequence information
16S sequences
- @ref: 31032
- description: Mucilaginibacter gynuensis strain YC7003 16S ribosomal RNA gene, partial sequence
- accession: KC247157
- length: 1483
- database: nuccore
- NCBI tax ID: 1302236
GC content
- @ref: 31032
- GC-content: 49
External links
@ref: 31032
culture collection no.: KACC 15532, JCM 17705
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 23475339 | Mucilaginibacter gynuensis sp. nov., isolated from rotten wood. | Khan H, Chung EJ, Jeon CO, Chung YR | Int J Syst Evol Microbiol | 10.1099/ijs.0.050153-0 | 2013 | Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis, Wood/*microbiology | Genetics |
Phylogeny | 27412244 | Mucilaginibacter pedocola sp. nov., isolated from a heavy-metal-contaminated paddy field. | Tang J, Huang J, Qiao Z, Wang R, Wang G | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001306 | 2016 | Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Metals, Heavy, *Oryza, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 31515591 | Mucilaginibacter hurinus sp. nov., isolated from briquette warehouse soil. | Choi L, Zhao X, Song Y, Wu M, Wang G, Li M | Arch Microbiol | 10.1007/s00203-019-01720-1 | 2019 | Bacterial Typing Techniques, Bacteroidetes/chemistry/*classification/genetics, Base Composition, DNA, Bacterial/genetics, Lipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity | Transcriptome |
Reference
@id | authors | title | doi/url | ID_cross_reference | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
31032 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27362 | 28776041 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |